Fix dependency scopes (#1534)

Fixes the following pom.xml issues:

1. pkl-doc and pkl-codegen-java sets the wrong dependency scopes for
pkl-commons-cli/pkl-base
2. pkl-config-kotlin sets the wrong dependency scope for
pkl-config-java-all

Closes #1293
Closes #1517

pkl-config-kotlin/pkl-config-kotlin.gradle.kts

@@ -101,7 +101,7 @@ publishing {
             appendNode("groupId", "org.pkl-lang")
             appendNode("artifactId", "pkl-config-java-all")
             appendNode("version", project.version)
-            appendNode("scope", "runtime")
+            appendNode("scope", "compile")
           }
         }
       }