/*

  * This file is part of dependency-check-core.

  *

  * Licensed under the Apache License, Version 2.0 (the "License");

  * you may not use this file except in compliance with the License.

  * You may obtain a copy of the License at

  *

  *     http://www.apache.org/licenses/LICENSE-2.0

  *

  * Unless required by applicable law or agreed to in writing, software

  * distributed under the License is distributed on an "AS IS" BASIS,

  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

  * See the License for the specific language governing permissions and

  * limitations under the License.

  *

  * Copyright (c) 2012 Jeremy Long. All Rights Reserved.

  */

 package org.owasp.dependencycheck.analyzer;

 import java.io.File;

 import java.io.FileFilter;

 import java.io.FileOutputStream;

 import java.io.IOException;

 import java.io.InputStream;

 import java.io.InputStreamReader;

 import java.io.OutputStream;

 import java.io.Reader;

 import java.util.ArrayList;

 import java.util.Collections;

 import java.util.Enumeration;

 import java.util.HashMap;

 import java.util.Iterator;

 import java.util.List;

 import java.util.Map;

 import java.util.Map.Entry;

 import java.util.Properties;

 import java.util.Set;

 import java.util.StringTokenizer;

 import java.util.jar.Attributes;

 import java.util.jar.JarEntry;

 import java.util.jar.JarFile;

 import java.util.jar.Manifest;

 import java.util.regex.Pattern;

 import java.util.zip.ZipEntry;

 import org.apache.commons.compress.utils.IOUtils;

 import org.apache.commons.io.FilenameUtils;

 import org.jsoup.Jsoup;

 import org.owasp.dependencycheck.Engine;

 import org.owasp.dependencycheck.analyzer.exception.AnalysisException;

 import org.owasp.dependencycheck.dependency.Confidence;

 import org.owasp.dependencycheck.dependency.Dependency;

 import org.owasp.dependencycheck.dependency.EvidenceCollection;

 import org.owasp.dependencycheck.utils.FileFilterBuilder;

 import org.owasp.dependencycheck.xml.pom.License;

 import org.owasp.dependencycheck.xml.pom.PomUtils;

 import org.owasp.dependencycheck.xml.pom.Model;

 import org.owasp.dependencycheck.utils.FileUtils;

 import org.owasp.dependencycheck.utils.Settings;

 import org.slf4j.Logger;

 import org.slf4j.LoggerFactory;

 /**

  * Used to load a JAR file and collect information that can be used to determine the associated CPE.

  *

  * @author Jeremy Long

  */

 public class JarAnalyzer extends AbstractFileTypeAnalyzer {

     //<editor-fold defaultstate="collapsed" desc="Constants and Member Variables">

     /**

      * The logger.

      */

     private static final Logger LOGGER = LoggerFactory.getLogger(JarAnalyzer.class);

     /**

      * The count of directories created during analysis. This is used for creating temporary directories.

      */

     private static int dirCount = 0;

     /**

      * The system independent newline character.

      */

     private static final String NEWLINE = System.getProperty("line.separator");

     /**

      * A list of values in the manifest to ignore as they only result in false positives.

      */

     private static final Set<String> IGNORE_VALUES = newHashSet(

             "Sun Java System Application Server");

     /**

      * A list of elements in the manifest to ignore.

      */

     private static final Set<String> IGNORE_KEYS = newHashSet(

             "built-by",

             "created-by",

             "builtby",

             "createdby",

             "build-jdk",

             "buildjdk",

             "ant-version",

             "antversion",

             "dynamicimportpackage",

             "dynamicimport-package",

             "dynamic-importpackage",

             "dynamic-import-package",

             "import-package",

             "ignore-package",

             "export-package",

             "importpackage",

             "ignorepackage",

             "exportpackage",

             "sealed",

             "manifest-version",

             "archiver-version",

             "manifestversion",

             "archiverversion",

             "classpath",

             "class-path",

             "tool",

             "bundle-manifestversion",

             "bundlemanifestversion",

             "bundle-vendor",

             "include-resource",

             "embed-dependency",

             "ipojo-components",

             "ipojo-extension",

             "eclipse-sourcereferences");

     /**

      * Deprecated Jar manifest attribute, that is, nonetheless, useful for analysis.

      */

     @SuppressWarnings("deprecation")

     private static final String IMPLEMENTATION_VENDOR_ID = Attributes.Name.IMPLEMENTATION_VENDOR_ID

             .toString();

     /**

      * item in some manifest, should be considered medium confidence.

      */

     private static final String BUNDLE_VERSION = "Bundle-Version"; //: 2.1.2

     /**

      * item in some manifest, should be considered medium confidence.

      */

     private static final String BUNDLE_DESCRIPTION = "Bundle-Description"; //: Apache Struts 2

     /**

      * item in some manifest, should be considered medium confidence.

      */

     private static final String BUNDLE_NAME = "Bundle-Name"; //: Struts 2 Core

     /**

      * A pattern to detect HTML within text.

      */

     private static final Pattern HTML_DETECTION_PATTERN = Pattern.compile("\\<[a-z]+.*/?\\>", Pattern.CASE_INSENSITIVE);

     //</editor-fold>

     /**

      * Constructs a new JarAnalyzer.

      */

     public JarAnalyzer() {

     }

     //<editor-fold defaultstate="collapsed" desc="All standard implmentation details of Analyzer">

     /**

      * The name of the analyzer.

      */

     private static final String ANALYZER_NAME = "Jar Analyzer";

     /**

      * The phase that this analyzer is intended to run in.

      */

     private static final AnalysisPhase ANALYSIS_PHASE = AnalysisPhase.INFORMATION_COLLECTION;

     /**

      * The set of file extensions supported by this analyzer.

      */

     private static final String[] EXTENSIONS = {"jar", "war"};

     /**

      * The file filter used to determine which files this analyzer supports.

      */

     private static final FileFilter FILTER = FileFilterBuilder.newInstance().addExtensions(EXTENSIONS).build();

     /**

      * Returns the FileFilter.

      *

      * @return the FileFilter

      */

     @Override

     protected FileFilter getFileFilter() {

         return FILTER;

     }

     /**

      * Returns the name of the analyzer.

      *

      * @return the name of the analyzer.

      */

     @Override

     public String getName() {

         return ANALYZER_NAME;

     }

     /**

      * Returns the phase that the analyzer is intended to run in.

      *

      * @return the phase that the analyzer is intended to run in.

      */

     @Override

     public AnalysisPhase getAnalysisPhase() {

         return ANALYSIS_PHASE;

     }

     //</editor-fold>

     /**

      * Returns the key used in the properties file to reference the analyzer's enabled property.

      *

      * @return the analyzer's enabled property setting key

      */

     @Override

     protected String getAnalyzerEnabledSettingKey() {

         return Settings.KEYS.ANALYZER_JAR_ENABLED;

     }

     /**

      * Loads a specified JAR file and collects information from the manifest and checksums to identify the correct CPE

      * information.

      *

      * @param dependency the dependency to analyze.

      * @param engine the engine that is scanning the dependencies

      * @throws AnalysisException is thrown if there is an error reading the JAR file.

      */

     @Override

     public void analyzeFileType(Dependency dependency, Engine engine) throws AnalysisException {

         try {

             final List<ClassNameInformation> classNames = collectClassNames(dependency);

             final String fileName = dependency.getFileName().toLowerCase();

             if (classNames.isEmpty()

                     && (fileName.endsWith("-sources.jar")

                     || fileName.endsWith("-javadoc.jar")

                     || fileName.endsWith("-src.jar")

                     || fileName.endsWith("-doc.jar"))) {

                 engine.getDependencies().remove(dependency);

             }

             final boolean hasManifest = parseManifest(dependency, classNames);

             final boolean hasPOM = analyzePOM(dependency, classNames, engine);

             final boolean addPackagesAsEvidence = !(hasManifest && hasPOM);

             analyzePackageNames(classNames, dependency, addPackagesAsEvidence);

         } catch (IOException ex) {

             throw new AnalysisException("Exception occurred reading the JAR file.", ex);

         }

     }

     /**

      * Attempts to find a pom.xml within the JAR file. If found it extracts information and adds it to the evidence. This will

      * attempt to interpolate the strings contained within the pom.properties if one exists.

      *

      * @param dependency the dependency being analyzed

      * @param classes a collection of class name information

      * @param engine the analysis engine, used to add additional dependencies

      * @throws AnalysisException is thrown if there is an exception parsing the pom

      * @return whether or not evidence was added to the dependency

      */

     protected boolean analyzePOM(Dependency dependency, List<ClassNameInformation> classes, Engine engine) throws AnalysisException {

         boolean foundSomething = false;

         final JarFile jar;

         try {

             jar = new JarFile(dependency.getActualFilePath());

         } catch (IOException ex) {

             LOGGER.warn("Unable to read JarFile '{}'.", dependency.getActualFilePath());

             LOGGER.trace("", ex);

             return false;

         }

         List<String> pomEntries;

         try {

             pomEntries = retrievePomListing(jar);

         } catch (IOException ex) {

             LOGGER.warn("Unable to read Jar file entries in '{}'.", dependency.getActualFilePath());

             LOGGER.trace("", ex);

             return false;

         }

         File externalPom = null;

         if (pomEntries.isEmpty()) {

             final String pomPath = FilenameUtils.removeExtension(dependency.getActualFilePath()) + ".pom";

             externalPom = new File(pomPath);

             if (externalPom.isFile()) {

                 pomEntries.add(pomPath);

             } else {

                 return false;

             }

         }

         for (String path : pomEntries) {

             LOGGER.debug("Reading pom entry: {}", path);

             Properties pomProperties = null;

             try {

                 if (externalPom == null) {

                     pomProperties = retrievePomProperties(path, jar);

                 }

             } catch (IOException ex) {

                 LOGGER.trace("ignore this, failed reading a non-existent pom.properties", ex);

             }

             Model pom = null;

             try {

                 if (pomEntries.size() > 1) {

                     //extract POM to its own directory and add it as its own dependency

                     final Dependency newDependency = new Dependency();

                     pom = extractPom(path, jar, newDependency);

                     final String displayPath = String.format("%s%s%s",

                             dependency.getFilePath(),

                             File.separator,

                             path);

                     final String displayName = String.format("%s%s%s",

                             dependency.getFileName(),

                             File.separator,

                             path);

                     newDependency.setFileName(displayName);

                     newDependency.setFilePath(displayPath);

                     pom.processProperties(pomProperties);

                     setPomEvidence(newDependency, pom, null);

                     engine.getDependencies().add(newDependency);

                     Collections.sort(engine.getDependencies());

                 } else {

                     if (externalPom == null) {

                         pom = PomUtils.readPom(path, jar);

                     } else {

                         pom = PomUtils.readPom(externalPom);

                     }

                     pom.processProperties(pomProperties);

                     foundSomething |= setPomEvidence(dependency, pom, classes);

                 }

             } catch (AnalysisException ex) {

                 LOGGER.warn("An error occurred while analyzing '{}'.", dependency.getActualFilePath());

                 LOGGER.trace("", ex);

             }

         }

         return foundSomething;

     }

     /**

      * Given a path to a pom.xml within a JarFile, this method attempts to load a sibling pom.properties if one exists.

      *

      * @param path the path to the pom.xml within the JarFile

      * @param jar the JarFile to load the pom.properties from

      * @return a Properties object or null if no pom.properties was found

      * @throws IOException thrown if there is an exception reading the pom.properties

      */

     private Properties retrievePomProperties(String path, final JarFile jar) throws IOException {

         Properties pomProperties = null;

         final String propPath = path.substring(0, path.length() - 7) + "pom.properies";

         final ZipEntry propEntry = jar.getEntry(propPath);

         if (propEntry != null) {

             Reader reader = null;

             try {

                 reader = new InputStreamReader(jar.getInputStream(propEntry), "UTF-8");

                 pomProperties = new Properties();

                 pomProperties.load(reader);

                 LOGGER.debug("Read pom.properties: {}", propPath);

             } finally {

                 if (reader != null) {

                     try {

                         reader.close();

                     } catch (IOException ex) {

                         LOGGER.trace("close error", ex);

                     }

                 }

             }

         }

         return pomProperties;

     }

     /**

      * Searches a JarFile for pom.xml entries and returns a listing of these entries.

      *

      * @param jar the JarFile to search

      * @return a list of pom.xml entries

      * @throws IOException thrown if there is an exception reading a JarEntry

      */

     private List<String> retrievePomListing(final JarFile jar) throws IOException {

         final List<String> pomEntries = new ArrayList<String>();

         final Enumeration<JarEntry> entries = jar.entries();

         while (entries.hasMoreElements()) {

             final JarEntry entry = entries.nextElement();

             final String entryName = (new File(entry.getName())).getName().toLowerCase();

             if (!entry.isDirectory() && "pom.xml".equals(entryName)) {

                 LOGGER.trace("POM Entry found: {}", entry.getName());

                 pomEntries.add(entry.getName());

             }

         }

         return pomEntries;

     }

     /**

      * Retrieves the specified POM from a jar file and converts it to a Model.

      *

      * @param path the path to the pom.xml file within the jar file

      * @param jar the jar file to extract the pom from

      * @param dependency the dependency being analyzed

      * @return returns the POM object

      * @throws AnalysisException is thrown if there is an exception extracting or parsing the POM

      * {@link org.owasp.dependencycheck.xml.pom.Model} object

      */

     private Model extractPom(String path, JarFile jar, Dependency dependency) throws AnalysisException {

         InputStream input = null;

         FileOutputStream fos = null;

         final File tmpDir = getNextTempDirectory();

         final File file = new File(tmpDir, "pom.xml");

         try {

             final ZipEntry entry = jar.getEntry(path);

             input = jar.getInputStream(entry);

             fos = new FileOutputStream(file);

             IOUtils.copy(input, fos);

             dependency.setActualFilePath(file.getAbsolutePath());

         } catch (IOException ex) {

             LOGGER.warn("An error occurred reading '{}' from '{}'.", path, dependency.getFilePath());

             LOGGER.error("", ex);

         } finally {

             closeStream(fos);

             closeStream(input);

         }

         return PomUtils.readPom(file);

     }

     /**

      * Silently closes an input stream ignoring errors.

      *

      * @param stream an input stream to close

      */

     private void closeStream(InputStream stream) {

         if (stream != null) {

             try {

                 stream.close();

             } catch (IOException ex) {

                 LOGGER.trace("", ex);

             }

         }

     }

     /**

      * Silently closes an output stream ignoring errors.

      *

      * @param stream an output stream to close

      */

     private void closeStream(OutputStream stream) {

         if (stream != null) {

             try {

                 stream.close();

             } catch (IOException ex) {

                 LOGGER.trace("", ex);

             }

         }

     }

     /**

      * Sets evidence from the pom on the supplied dependency.

      *

      * @param dependency the dependency to set data on

      * @param pom the information from the pom

      * @param classes a collection of ClassNameInformation - containing data about the fully qualified class names within the JAR

      * file being analyzed

      * @return true if there was evidence within the pom that we could use; otherwise false

      */

     public static boolean setPomEvidence(Dependency dependency, Model pom, List<ClassNameInformation> classes) {

         boolean foundSomething = false;

         boolean addAsIdentifier = true;

         if (pom == null) {

             return foundSomething;

         }

         String groupid = pom.getGroupId();

         String parentGroupId = pom.getParentGroupId();

         String artifactid = pom.getArtifactId();

         String parentArtifactId = pom.getParentArtifactId();

         String version = pom.getVersion();

         String parentVersion = pom.getParentVersion();

         if ("org.sonatype.oss".equals(parentGroupId) && "oss-parent".equals(parentArtifactId)) {

             parentGroupId = null;

             parentArtifactId = null;

             parentVersion = null;

         }

         if ((groupid == null || groupid.isEmpty()) && parentGroupId != null && !parentGroupId.isEmpty()) {

             groupid = parentGroupId;

         }

         final String originalGroupID = groupid;

         if (groupid.startsWith("org.") || groupid.startsWith("com.")) {

             groupid = groupid.substring(4);

         }

         if ((artifactid == null || artifactid.isEmpty()) && parentArtifactId != null && !parentArtifactId.isEmpty()) {

             artifactid = parentArtifactId;

         }

         final String originalArtifactID = artifactid;

         if (artifactid.startsWith("org.") || artifactid.startsWith("com.")) {

             artifactid = artifactid.substring(4);

         }

         if ((version == null || version.isEmpty()) && parentVersion != null && !parentVersion.isEmpty()) {

             version = parentVersion;

         }

         if (groupid != null && !groupid.isEmpty()) {

             foundSomething = true;

             dependency.getVendorEvidence().addEvidence("pom", "groupid", groupid, Confidence.HIGHEST);

             dependency.getProductEvidence().addEvidence("pom", "groupid", groupid, Confidence.LOW);

             addMatchingValues(classes, groupid, dependency.getVendorEvidence());

             addMatchingValues(classes, groupid, dependency.getProductEvidence());

             if (parentGroupId != null && !parentGroupId.isEmpty() && !parentGroupId.equals(groupid)) {

                 dependency.getVendorEvidence().addEvidence("pom", "parent-groupid", parentGroupId, Confidence.MEDIUM);

                 dependency.getProductEvidence().addEvidence("pom", "parent-groupid", parentGroupId, Confidence.LOW);

                 addMatchingValues(classes, parentGroupId, dependency.getVendorEvidence());

                 addMatchingValues(classes, parentGroupId, dependency.getProductEvidence());

             }

         } else {

             addAsIdentifier = false;

         }

         if (artifactid != null && !artifactid.isEmpty()) {

             foundSomething = true;

             dependency.getProductEvidence().addEvidence("pom", "artifactid", artifactid, Confidence.HIGHEST);

             dependency.getVendorEvidence().addEvidence("pom", "artifactid", artifactid, Confidence.LOW);

             addMatchingValues(classes, artifactid, dependency.getVendorEvidence());

             addMatchingValues(classes, artifactid, dependency.getProductEvidence());

             if (parentArtifactId != null && !parentArtifactId.isEmpty() && !parentArtifactId.equals(artifactid)) {

                 dependency.getProductEvidence().addEvidence("pom", "parent-artifactid", parentArtifactId, Confidence.MEDIUM);

                 dependency.getVendorEvidence().addEvidence("pom", "parent-artifactid", parentArtifactId, Confidence.LOW);

                 addMatchingValues(classes, parentArtifactId, dependency.getVendorEvidence());

                 addMatchingValues(classes, parentArtifactId, dependency.getProductEvidence());

             }

         } else {

             addAsIdentifier = false;

         }

         if (version != null && !version.isEmpty()) {

             foundSomething = true;

             dependency.getVersionEvidence().addEvidence("pom", "version", version, Confidence.HIGHEST);

             if (parentVersion != null && !parentVersion.isEmpty() && !parentVersion.equals(version)) {

                 dependency.getVersionEvidence().addEvidence("pom", "parent-version", version, Confidence.LOW);

             }

         } else {

             addAsIdentifier = false;

         }

         if (addAsIdentifier) {

             dependency.addIdentifier("maven", String.format("%s:%s:%s", originalGroupID, originalArtifactID, version), null, Confidence.HIGH);

         }

         // org name

         final String org = pom.getOrganization();

         if (org != null && !org.isEmpty()) {

             dependency.getVendorEvidence().addEvidence("pom", "organization name", org, Confidence.HIGH);

             dependency.getProductEvidence().addEvidence("pom", "organization name", org, Confidence.LOW);

             addMatchingValues(classes, org, dependency.getVendorEvidence());

             addMatchingValues(classes, org, dependency.getProductEvidence());

         }

         //pom name

         final String pomName = pom.getName();

         if (pomName

                 != null && !pomName.isEmpty()) {

             foundSomething = true;

             dependency.getProductEvidence().addEvidence("pom", "name", pomName, Confidence.HIGH);

             dependency.getVendorEvidence().addEvidence("pom", "name", pomName, Confidence.HIGH);

             addMatchingValues(classes, pomName, dependency.getVendorEvidence());

             addMatchingValues(classes, pomName, dependency.getProductEvidence());

         }

         //Description

         final String description = pom.getDescription();

         if (description != null && !description.isEmpty() && !description.startsWith("POM was created by")) {

             foundSomething = true;

             final String trimmedDescription = addDescription(dependency, description, "pom", "description");

             addMatchingValues(classes, trimmedDescription, dependency.getVendorEvidence());

             addMatchingValues(classes, trimmedDescription, dependency.getProductEvidence());

         }

         extractLicense(pom, dependency);

         return foundSomething;

     }

     /**

      * Analyzes the path information of the classes contained within the JarAnalyzer to try and determine possible vendor or

      * product names. If any are found they are stored in the packageVendor and packageProduct hashSets.

      *

      * @param classNames a list of class names

      * @param dependency a dependency to analyze

      * @param addPackagesAsEvidence a flag indicating whether or not package names should be added as evidence.

      */

     protected void analyzePackageNames(List<ClassNameInformation> classNames,

             Dependency dependency, boolean addPackagesAsEvidence) {

         final Map<String, Integer> vendorIdentifiers = new HashMap<String, Integer>();

         final Map<String, Integer> productIdentifiers = new HashMap<String, Integer>();

         analyzeFullyQualifiedClassNames(classNames, vendorIdentifiers, productIdentifiers);

         final int classCount = classNames.size();

         final EvidenceCollection vendor = dependency.getVendorEvidence();

         final EvidenceCollection product = dependency.getProductEvidence();

         for (Map.Entry<String, Integer> entry : vendorIdentifiers.entrySet()) {

             final float ratio = entry.getValue() / (float) classCount;

             if (ratio > 0.5) {

                 //TODO remove weighting

                 vendor.addWeighting(entry.getKey());

                 if (addPackagesAsEvidence && entry.getKey().length() > 1) {

                     vendor.addEvidence("jar", "package name", entry.getKey(), Confidence.LOW);

                 }

             }

         }

         for (Map.Entry<String, Integer> entry : productIdentifiers.entrySet()) {

             final float ratio = entry.getValue() / (float) classCount;

             if (ratio > 0.5) {

                 product.addWeighting(entry.getKey());

                 if (addPackagesAsEvidence && entry.getKey().length() > 1) {

                     product.addEvidence("jar", "package name", entry.getKey(), Confidence.LOW);

                 }

             }

         }

     }

     /**

      * <p>

      * Reads the manifest from the JAR file and collects the entries. Some vendorKey entries are:</p>

      * <ul><li>Implementation Title</li>

      * <li>Implementation Version</li> <li>Implementation Vendor</li>

      * <li>Implementation VendorId</li> <li>Bundle Name</li> <li>Bundle Version</li> <li>Bundle Vendor</li> <li>Bundle

      * Description</li> <li>Main Class</li> </ul>

      * However, all but a handful of specific entries are read in.

      *

      * @param dependency A reference to the dependency

      * @param classInformation a collection of class information

      * @return whether evidence was identified parsing the manifest

      * @throws IOException if there is an issue reading the JAR file

      */

     protected boolean parseManifest(Dependency dependency, List<ClassNameInformation> classInformation) throws IOException {

         boolean foundSomething = false;

         JarFile jar = null;

         try {

             jar = new JarFile(dependency.getActualFilePath());

             final Manifest manifest = jar.getManifest();

             if (manifest == null) {

                 //don't log this for javadoc or sources jar files

                 if (!dependency.getFileName().toLowerCase().endsWith("-sources.jar")

                         && !dependency.getFileName().toLowerCase().endsWith("-javadoc.jar")

                         && !dependency.getFileName().toLowerCase().endsWith("-src.jar")

                         && !dependency.getFileName().toLowerCase().endsWith("-doc.jar")) {

                     LOGGER.debug("Jar file '{}' does not contain a manifest.",

                             dependency.getFileName());

                 }

                 return false;

             }

             final EvidenceCollection vendorEvidence = dependency.getVendorEvidence();

             final EvidenceCollection productEvidence = dependency.getProductEvidence();

             final EvidenceCollection versionEvidence = dependency.getVersionEvidence();

             String source = "Manifest";

             String specificationVersion = null;

             boolean hasImplementationVersion = false;

             Attributes atts = manifest.getMainAttributes();

             for (Entry<Object, Object> entry : atts.entrySet()) {

                 String key = entry.getKey().toString();

                 String value = atts.getValue(key);

                 if (HTML_DETECTION_PATTERN.matcher(value).find()) {

                     value = Jsoup.parse(value).text();

                 }

                 if (IGNORE_VALUES.contains(value)) {

                     continue;

                 } else if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_TITLE.toString())) {

                     foundSomething = true;

                     productEvidence.addEvidence(source, key, value, Confidence.HIGH);

                     addMatchingValues(classInformation, value, productEvidence);

                 } else if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_VERSION.toString())) {

                     hasImplementationVersion = true;

                     foundSomething = true;

                     versionEvidence.addEvidence(source, key, value, Confidence.HIGH);

                 } else if ("specification-version".equalsIgnoreCase(key)) {

                     specificationVersion = key;

                 } else if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_VENDOR.toString())) {

                     foundSomething = true;

                     vendorEvidence.addEvidence(source, key, value, Confidence.HIGH);

                     addMatchingValues(classInformation, value, vendorEvidence);

                 } else if (key.equalsIgnoreCase(IMPLEMENTATION_VENDOR_ID)) {

                     foundSomething = true;

                     vendorEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                     addMatchingValues(classInformation, value, vendorEvidence);

                 } else if (key.equalsIgnoreCase(BUNDLE_DESCRIPTION)) {

                     foundSomething = true;

                     addDescription(dependency, value, "manifest", key);

                     //productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                     addMatchingValues(classInformation, value, productEvidence);

                 } else if (key.equalsIgnoreCase(BUNDLE_NAME)) {

                     foundSomething = true;

                     productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                     addMatchingValues(classInformation, value, productEvidence);

 //                //the following caused false positives.

 //                } else if (key.equalsIgnoreCase(BUNDLE_VENDOR)) {

 //                    foundSomething = true;

 //                    vendorEvidence.addEvidence(source, key, value, Confidence.HIGH);

 //                    addMatchingValues(classInformation, value, vendorEvidence);

                 } else if (key.equalsIgnoreCase(BUNDLE_VERSION)) {

                     foundSomething = true;

                     versionEvidence.addEvidence(source, key, value, Confidence.HIGH);

                 } else if (key.equalsIgnoreCase(Attributes.Name.MAIN_CLASS.toString())) {

                     continue;

                     //skipping main class as if this has important information to add

                     // it will be added during class name analysis...  if other fields

                     // have the information from the class name then they will get added...

 //                    foundSomething = true;

 //                    productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

 //                    vendorEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

 //                    addMatchingValues(classInformation, value, vendorEvidence);

 //                    addMatchingValues(classInformation, value, productEvidence);

                 } else {

                     key = key.toLowerCase();

                     if (!IGNORE_KEYS.contains(key)

                             && !key.endsWith("jdk")

                             && !key.contains("lastmodified")

                             && !key.endsWith("package")

                             && !key.endsWith("classpath")

                             && !key.endsWith("class-path")

                             && !key.endsWith("-scm") //todo change this to a regex?

                             && !key.startsWith("scm-")

                             && !value.trim().startsWith("scm:")

                             && !isImportPackage(key, value)

                             && !isPackage(key, value)) {

                         foundSomething = true;

                         if (key.contains("version")) {

                             if (!key.contains("specification")) {

                                 versionEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                             }

                         } else if ("build-id".equals(key)) {

                             int pos = value.indexOf('(');

                             if (pos >= 0) {

                                 value = value.substring(0, pos - 1);

                             }

                             pos = value.indexOf('[');

                             if (pos >= 0) {

                                 value = value.substring(0, pos - 1);

                             }

                             versionEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                         } else if (key.contains("title")) {

                             productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                             addMatchingValues(classInformation, value, productEvidence);

                         } else if (key.contains("vendor")) {

                             if (key.contains("specification")) {

                                 vendorEvidence.addEvidence(source, key, value, Confidence.LOW);

                             } else {

                                 vendorEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                                 addMatchingValues(classInformation, value, vendorEvidence);

                             }

                         } else if (key.contains("name")) {

                             productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                             vendorEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                             addMatchingValues(classInformation, value, vendorEvidence);

                             addMatchingValues(classInformation, value, productEvidence);

                         } else if (key.contains("license")) {

                             addLicense(dependency, value);

                         } else {

                             if (key.contains("description")) {

                                 addDescription(dependency, value, "manifest", key);

                             } else {

                                 productEvidence.addEvidence(source, key, value, Confidence.LOW);

                                 vendorEvidence.addEvidence(source, key, value, Confidence.LOW);

                                 addMatchingValues(classInformation, value, vendorEvidence);

                                 addMatchingValues(classInformation, value, productEvidence);

                                 if (value.matches(".*\\d.*")) {

                                     final StringTokenizer tokenizer = new StringTokenizer(value, " ");

                                     while (tokenizer.hasMoreElements()) {

                                         final String s = tokenizer.nextToken();

                                         if (s.matches("^[0-9.]+$")) {

                                             versionEvidence.addEvidence(source, key, s, Confidence.LOW);

                                         }

                                     }

                                 }

                             }

                         }

                     }

                 }

             }

             final Map<String, Attributes> entries = manifest.getEntries();

             for (Iterator<String> it = entries.keySet().iterator(); it.hasNext();) {

                 final String name = it.next();

                 source = "manifest: " + name;

                 atts = entries.get(name);

                 for (Entry<Object, Object> entry : atts.entrySet()) {

                     final String key = entry.getKey().toString();

                     final String value = atts.getValue(key);

                     if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_TITLE.toString())) {

                         foundSomething = true;

                         productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                         addMatchingValues(classInformation, value, productEvidence);

                     } else if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_VERSION.toString())) {

                         foundSomething = true;

                         versionEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                     } else if (key.equalsIgnoreCase(Attributes.Name.IMPLEMENTATION_VENDOR.toString())) {

                         foundSomething = true;

                         vendorEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                         addMatchingValues(classInformation, value, vendorEvidence);

                     } else if (key.equalsIgnoreCase(Attributes.Name.SPECIFICATION_TITLE.toString())) {

                         foundSomething = true;

                         productEvidence.addEvidence(source, key, value, Confidence.MEDIUM);

                         addMatchingValues(classInformation, value, productEvidence);

                     }

                 }

             }

             if (specificationVersion != null && !hasImplementationVersion) {

                 foundSomething = true;

                 versionEvidence.addEvidence(source, "specification-version", specificationVersion, Confidence.HIGH);

             }

         } finally {

             if (jar != null) {

                 jar.close();

             }

         }

         return foundSomething;

     }

     /**

      * Adds a description to the given dependency. If the description contains one of the following strings beyond 100 characters,

      * then the description used will be trimmed to that position:

      * <ul><li>"such as"</li><li>"like "</li><li>"will use "</li><li>"* uses "</li></ul>

      *

      * @param dependency a dependency

      * @param description the description

      * @param source the source of the evidence

      * @param key the "name" of the evidence

      * @return if the description is trimmed, the trimmed version is returned; otherwise the original description is returned

      */

     public static String addDescription(Dependency dependency, String description, String source, String key) {

         if (dependency.getDescription() == null) {

             dependency.setDescription(description);

         }

         String desc;

         if (HTML_DETECTION_PATTERN.matcher(description).find()) {

             desc = Jsoup.parse(description).text();

         } else {

             desc = description;

         }

         dependency.setDescription(desc);

         if (desc.length() > 100) {

             desc = desc.replaceAll("\\s\\s+", " ");

             final int posSuchAs = desc.toLowerCase().indexOf("such as ", 100);

             final int posLike = desc.toLowerCase().indexOf("like ", 100);

             final int posWillUse = desc.toLowerCase().indexOf("will use ", 100);

             final int posUses = desc.toLowerCase().indexOf(" uses ", 100);

             int pos = -1;

             pos = Math.max(pos, posSuchAs);

             if (pos >= 0 && posLike >= 0) {

                 pos = Math.min(pos, posLike);

             } else {

                 pos = Math.max(pos, posLike);

             }

             if (pos >= 0 && posWillUse >= 0) {

                 pos = Math.min(pos, posWillUse);

             } else {

                 pos = Math.max(pos, posWillUse);

             }

             if (pos >= 0 && posUses >= 0) {

                 pos = Math.min(pos, posUses);

             } else {

                 pos = Math.max(pos, posUses);

             }

             if (pos > 0) {

                 desc = desc.substring(0, pos) + "...";

             }

             dependency.getProductEvidence().addEvidence(source, key, desc, Confidence.LOW);

             dependency.getVendorEvidence().addEvidence(source, key, desc, Confidence.LOW);

         } else {

             dependency.getProductEvidence().addEvidence(source, key, desc, Confidence.MEDIUM);

             dependency.getVendorEvidence().addEvidence(source, key, desc, Confidence.MEDIUM);

         }

         return desc;

     }

     /**

      * Adds a license to the given dependency.

      *

      * @param d a dependency

      * @param license the license

      */

     private void addLicense(Dependency d, String license) {

         if (d.getLicense() == null) {

             d.setLicense(license);

         } else if (!d.getLicense().contains(license)) {

             d.setLicense(d.getLicense() + NEWLINE + license);

         }

     }

     /**

      * The parent directory for the individual directories per archive.

      */

     private File tempFileLocation = null;

     /**

      * Initializes the JarAnalyzer.

      *

      * @throws Exception is thrown if there is an exception creating a temporary directory

      */

     @Override

     public void initializeFileTypeAnalyzer() throws Exception {

         final File baseDir = Settings.getTempDirectory();

         tempFileLocation = File.createTempFile("check", "tmp", baseDir);

         if (!tempFileLocation.delete()) {

             final String msg = String.format("Unable to delete temporary file '%s'.", tempFileLocation.getAbsolutePath());

             throw new AnalysisException(msg);

         }

         if (!tempFileLocation.mkdirs()) {

             final String msg = String.format("Unable to create directory '%s'.", tempFileLocation.getAbsolutePath());

             throw new AnalysisException(msg);

         }

     }

     /**

      * Deletes any files extracted from the JAR during analysis.

      */

     @Override

     public void close() {

         if (tempFileLocation != null && tempFileLocation.exists()) {

             LOGGER.debug("Attempting to delete temporary files");

             final boolean success = FileUtils.delete(tempFileLocation);

             if (!success) {

                 LOGGER.warn("Failed to delete some temporary files, see the log for more details");

             }

         }

     }

     /**

      * Determines if the key value pair from the manifest is for an "import" type entry for package names.

      *

      * @param key the key from the manifest

      * @param value the value from the manifest

      * @return true or false depending on if it is believed the entry is an "import" entry

      */

     private boolean isImportPackage(String key, String value) {

         final Pattern packageRx = Pattern.compile("^([a-zA-Z0-9_#\\$\\*\\.]+\\s*[,;]\\s*)+([a-zA-Z0-9_#\\$\\*\\.]+\\s*)?$");

         final boolean matches = packageRx.matcher(value).matches();

         return matches && (key.contains("import") || key.contains("include") || value.length() > 10);

     }

     /**

      * Cycles through an enumeration of JarEntries, contained within the dependency, and returns a list of the class names. This

      * does not include core Java package names (i.e. java.* or javax.*).

      *

      * @param dependency the dependency being analyzed

      * @return an list of fully qualified class names

      */

     private List<ClassNameInformation> collectClassNames(Dependency dependency) {

         final List<ClassNameInformation> classNames = new ArrayList<ClassNameInformation>();

         JarFile jar = null;

         try {

             jar = new JarFile(dependency.getActualFilePath());

             final Enumeration<JarEntry> entries = jar.entries();

             while (entries.hasMoreElements()) {

                 final JarEntry entry = entries.nextElement();

                 final String name = entry.getName().toLowerCase();

                 //no longer stripping "|com\\.sun" - there are some com.sun jar files with CVEs.

                 if (name.endsWith(".class") && !name.matches("^javax?\\..*$")) {

                     final ClassNameInformation className = new ClassNameInformation(name.substring(0, name.length() - 6));

                     classNames.add(className);

                 }

             }

         } catch (IOException ex) {

             LOGGER.warn("Unable to open jar file '{}'.", dependency.getFileName());

             LOGGER.debug("", ex);

         } finally {

             if (jar != null) {

                 try {

                     jar.close();

                 } catch (IOException ex) {

                     LOGGER.trace("", ex);

                 }

             }

         }

         return classNames;

     }

     /**

      * Cycles through the list of class names and places the package levels 0-3 into the provided maps for vendor and product.

      * This is helpful when analyzing vendor/product as many times this is included in the package name.

      *

      * @param classNames a list of class names

      * @param vendor HashMap of possible vendor names from package names (e.g. owasp)

      * @param product HashMap of possible product names from package names (e.g. dependencycheck)

      */

     private void analyzeFullyQualifiedClassNames(List<ClassNameInformation> classNames,

             Map<String, Integer> vendor, Map<String, Integer> product) {

         for (ClassNameInformation entry : classNames) {

             final List<String> list = entry.getPackageStructure();

             addEntry(vendor, list.get(0));

             if (list.size() == 2) {

                 addEntry(product, list.get(1));

             }

             if (list.size() == 3) {

                 addEntry(vendor, list.get(1));

                 addEntry(product, list.get(1));

                 addEntry(product, list.get(2));

             }

             if (list.size() >= 4) {

                 addEntry(vendor, list.get(1));

                 addEntry(vendor, list.get(2));

                 addEntry(product, list.get(1));

                 addEntry(product, list.get(2));

                 addEntry(product, list.get(3));

             }

         }

     }

     /**

      * Adds an entry to the specified collection and sets the Integer (e.g. the count) to 1. If the entry already exists in the

      * collection then the Integer is incremented by 1.

      *

      * @param collection a collection of strings and their occurrence count

      * @param key the key to add to the collection

      */

     private void addEntry(Map<String, Integer> collection, String key) {

         if (collection.containsKey(key)) {

             collection.put(key, collection.get(key) + 1);

         } else {

             collection.put(key, 1);

         }

     }

     /**

      * Cycles through the collection of class name information to see if parts of the package names are contained in the provided

      * value. If found, it will be added as the HIGHEST confidence evidence because we have more then one source corroborating the

      * value.

      *

      * @param classes a collection of class name information

      * @param value the value to check to see if it contains a package name

      * @param evidence the evidence collection to add new entries too

      */

     private static void addMatchingValues(List<ClassNameInformation> classes, String value, EvidenceCollection evidence) {

         if (value == null || value.isEmpty() || classes == null || classes.isEmpty()) {

             return;

         }

         final String text = value.toLowerCase();

         for (ClassNameInformation cni : classes) {

             for (String key : cni.getPackageStructure()) {

                 final Pattern p = Pattern.compile("\b" + key + "\b");

                 if (p.matcher(text).find()) {

                     //if (text.contains(key)) { //note, package structure elements are already lowercase.

                     evidence.addEvidence("jar", "package name", key, Confidence.HIGHEST);

                 }

             }

         }

     }

     /**

      * Simple check to see if the attribute from a manifest is just a package name.

      *

      * @param key the key of the value to check

      * @param value the value to check

      * @return true if the value looks like a java package name, otherwise false

      */

     private boolean isPackage(String key, String value) {

         return !key.matches(".*(version|title|vendor|name|license|description).*")

                 && value.matches("^([a-zA-Z_][a-zA-Z0-9_\\$]*(\\.[a-zA-Z_][a-zA-Z0-9_\\$]*)*)?$");

     }

     /**

      * Extracts the license information from the pom and adds it to the dependency.

      *

      * @param pom the pom object

      * @param dependency the dependency to add license information too

      */

     public static void extractLicense(Model pom, Dependency dependency) {

         //license

         if (pom.getLicenses() != null) {

             String license = null;

             for (License lic : pom.getLicenses()) {

                 String tmp = null;

                 if (lic.getName() != null) {

                     tmp = lic.getName();

                 }

                 if (lic.getUrl() != null) {

                     if (tmp == null) {

                         tmp = lic.getUrl();

                     } else {

                         tmp += ": " + lic.getUrl();

                     }

                 }

                 if (tmp == null) {

                     continue;

                 }

                 if (HTML_DETECTION_PATTERN.matcher(tmp).find()) {

                     tmp = Jsoup.parse(tmp).text();

                 }

                 if (license == null) {

                     license = tmp;

                 } else {

                     license += "\n" + tmp;

                 }

             }

             if (license != null) {

                 dependency.setLicense(license);

             }

         }

     }

     /**

      * Stores information about a class name.

      */

     protected static class ClassNameInformation {

         /**

          * <p>

          * Stores information about a given class name. This class will keep the fully qualified class name and a list of the

          * important parts of the package structure. Up to the first four levels of the package structure are stored, excluding a

          * leading "org" or "com". Example:</p>

          * <code>ClassNameInformation obj = new ClassNameInformation("org.owasp.dependencycheck.analyzer.JarAnalyzer");

          * System.out.println(obj.getName());

          * for (String p : obj.getPackageStructure())

          *     System.out.println(p);

          * </code>

          * <p>

          * Would result in:</p>

          * <code>org.owasp.dependencycheck.analyzer.JarAnalyzer

          * owasp

          * dependencycheck

          * analyzer

          * jaranalyzer</code>

          *

          * @param className a fully qualified class name

          */

         ClassNameInformation(String className) {

             name = className;

             if (name.contains("/")) {

                 final String[] tmp = className.toLowerCase().split("/");

                 int start = 0;

                 int end = 3;

                 if ("com".equals(tmp[0]) || "org".equals(tmp[0])) {

                     start = 1;

                     end = 4;

                 }

                 if (tmp.length <= end) {

                     end = tmp.length - 1;

                 }

                 for (int i = start; i <= end; i++) {

                     packageStructure.add(tmp[i]);

                 }

             } else {

                 packageStructure.add(name);

             }

         }

         /**

          * The fully qualified class name.

          */

         private String name;

         /**

          * Get the value of name

          *

          * @return the value of name

          */

         public String getName() {

             return name;

         }

         /**

          * Set the value of name

          *

          * @param name new value of name

          */

         public void setName(String name) {

             this.name = name;

         }

         /**

          * Up to the first four levels of the package structure, excluding a leading "org" or "com".

          */

         private final ArrayList<String> packageStructure = new ArrayList<String>();

         /**

          * Get the value of packageStructure

          *

          * @return the value of packageStructure

          */

         public ArrayList<String> getPackageStructure() {

             return packageStructure;

         }

     }

     /**

      * Retrieves the next temporary directory to extract an archive too.

      *

      * @return a directory

      * @throws AnalysisException thrown if unable to create temporary directory

      */

     private File getNextTempDirectory() throws AnalysisException {

         dirCount += 1;

         final File directory = new File(tempFileLocation, String.valueOf(dirCount));

         //getting an exception for some directories not being able to be created; might be because the directory already exists?

         if (directory.exists()) {

             return getNextTempDirectory();

         }

         if (!directory.mkdirs()) {

             final String msg = String.format("Unable to create temp directory '%s'.", directory.getAbsolutePath());

             throw new AnalysisException(msg);

         }

         return directory;

     }

 }