/*
    * This file is part of dependency-check-core.
    *
    * Licensed under the Apache License, Version 2.0 (the "License");
    * you may not use this file except in compliance with the License.
    * You may obtain a copy of the License at
    *
    *     http://www.apache.org/licenses/LICENSE-2.0
    *
   * Unless required by applicable law or agreed to in writing, software
   * distributed under the License is distributed on an "AS IS" BASIS,
   * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   * See the License for the specific language governing permissions and
   * limitations under the License.
   *
   * Copyright (c) 2013 Jeremy Long. All Rights Reserved.
   */
  package org.owasp.dependencycheck.utils;
  
  import java.io.BufferedInputStream;
  import java.io.File;
  import java.io.FileInputStream;
  import java.io.FileNotFoundException;
  import java.io.FileOutputStream;
  import java.io.FilenameFilter;
  import java.io.IOException;
  import java.util.zip.GZIPInputStream;
  import java.util.zip.ZipEntry;
  import java.util.zip.ZipInputStream;
  
  import org.apache.commons.compress.archivers.ArchiveEntry;
  import org.apache.commons.compress.archivers.ArchiveInputStream;
  import org.apache.commons.compress.archivers.zip.ZipArchiveInputStream;
  import org.apache.commons.compress.utils.IOUtils;
  import org.owasp.dependencycheck.Engine;
  import org.owasp.dependencycheck.analyzer.exception.AnalysisException;
  import org.owasp.dependencycheck.analyzer.exception.ArchiveExtractionException;
  import org.slf4j.Logger;
  import org.slf4j.LoggerFactory;
  
  /**
   * Set of utilities to extract files from archives.
   *
   * @author Jeremy Long
   */
  public final class ExtractionUtil {
  
      /**
       * The logger.
       */
      private static final Logger LOGGER = LoggerFactory.getLogger(ExtractionUtil.class);
  
      /**
       * Private constructor for a utility class.
       */
      private ExtractionUtil() {
      }
  
      /**
       * Extracts the contents of an archive into the specified directory.
       *
       * @param archive an archive file such as a WAR or EAR
       * @param extractTo a directory to extract the contents to
       * @throws ExtractionException thrown if an exception occurs while
       * extracting the files
       */
      public static void extractFiles(File archive, File extractTo) throws ExtractionException {
          extractFiles(archive, extractTo, null);
      }
  
      /**
       * Extracts the contents of an archive into the specified directory. The
       * files are only extracted if they are supported by the analyzers loaded
       * into the specified engine. If the engine is specified as null then all
       * files are extracted.
       *
       * @param archive an archive file such as a WAR or EAR
       * @param extractTo a directory to extract the contents to
       * @param engine the scanning engine
       * @throws ExtractionException thrown if there is an error extracting the
       * files
       */
      public static void extractFiles(File archive, File extractTo, Engine engine) throws ExtractionException {
          if (archive == null || extractTo == null) {
              return;
          }
  
          FileInputStream fis = null;
          ZipInputStream zis = null;
  
          try {
              fis = new FileInputStream(archive);
          } catch (FileNotFoundException ex) {
              LOGGER.debug("", ex);
              throw new ExtractionException("Archive file was not found.", ex);
          }
          zis = new ZipInputStream(new BufferedInputStream(fis));
          ZipEntry entry;
          try {
             while ((entry = zis.getNextEntry()) != null) {
                 if (entry.isDirectory()) {
                     final File d = new File(extractTo, entry.getName());
                     if (!d.exists() && !d.mkdirs()) {
                         final String msg = String.format("Unable to create '%s'.", d.getAbsolutePath());
                         throw new ExtractionException(msg);
                     }
                 } else {
                     final File file = new File(extractTo, entry.getName());
                     if (engine == null || engine.accept(file)) {
                         FileOutputStream fos = null;
                         try {
                             fos = new FileOutputStream(file);
                             IOUtils.copy(zis, fos);
                         } catch (FileNotFoundException ex) {
                             LOGGER.debug("", ex);
                             final String msg = String.format("Unable to find file '%s'.", file.getName());
                             throw new ExtractionException(msg, ex);
                         } catch (IOException ex) {
                             LOGGER.debug("", ex);
                             final String msg = String.format("IO Exception while parsing file '%s'.", file.getName());
                             throw new ExtractionException(msg, ex);
                         } finally {
                             FileUtils.close(fos);
                         }
                     }
                 }
             }
         } catch (IOException ex) {
             final String msg = String.format("Exception reading archive '%s'.", archive.getName());
             LOGGER.debug("", ex);
             throw new ExtractionException(msg, ex);
         } finally {
             FileUtils.close(zis);
         }
     }
 
     /**
      * Extracts the contents of an archive into the specified directory.
      *
      * @param archive an archive file such as a WAR or EAR
      * @param destination a directory to extract the contents to
      * @param filter determines which files get extracted
      * @throws ExtractionException thrown if the archive is not found
      */
     public static void extractFilesUsingFilter(File archive, File destination,
             FilenameFilter filter) throws ExtractionException {
         if (archive == null || destination == null) {
             return;
         }
 
         FileInputStream fis = null;
         try {
             fis = new FileInputStream(archive);
         } catch (FileNotFoundException ex) {
             LOGGER.debug("", ex);
             throw new ExtractionException("Archive file was not found.", ex);
         }
         try {
             extractArchive(new ZipArchiveInputStream(new BufferedInputStream(
                     fis)), destination, filter);
         } catch (ArchiveExtractionException ex) {
             LOGGER.warn("Exception extracting archive '{}'.", archive.getName());
             LOGGER.debug("", ex);
         } finally {
             try {
                 fis.close();
             } catch (IOException ex) {
                 LOGGER.debug("", ex);
             }
         }
     }
 
     /**
      * Extracts files from an archive.
      *
      * @param input the archive to extract files from
      * @param destination the location to write the files too
      * @param filter determines which files get extracted
      * @throws ArchiveExtractionException thrown if there is an exception
      * extracting files from the archive
      */
     private static void extractArchive(ArchiveInputStream input,
             File destination, FilenameFilter filter)
             throws ArchiveExtractionException {
         ArchiveEntry entry;
         try {
             while ((entry = input.getNextEntry()) != null) {
                 if (entry.isDirectory()) {
                     final File dir = new File(destination, entry.getName());
                     if (!dir.exists() && !dir.mkdirs()) {
                         final String msg = String.format(
                                 "Unable to create directory '%s'.",
                                 dir.getAbsolutePath());
                         throw new AnalysisException(msg);
                     }
                 } else {
                     extractFile(input, destination, filter, entry);
                 }
             }
         } catch (IOException ex) {
             throw new ArchiveExtractionException(ex);
         } catch (Throwable ex) {
             throw new ArchiveExtractionException(ex);
         } finally {
             FileUtils.close(input);
         }
     }
 
     /**
      * Extracts a file from an archive (input stream) and correctly builds the
      * directory structure.
      *
      * @param input the archive input stream
      * @param destination where to write the file
      * @param filter the file filter to apply to the files being extracted
      * @param entry the entry from the archive to extract
      * @throws ExtractionException thrown if there is an error reading from the
      * archive stream
      */
     private static void extractFile(ArchiveInputStream input, File destination,
             FilenameFilter filter, ArchiveEntry entry) throws ExtractionException {
         final File file = new File(destination, entry.getName());
         if (filter.accept(file.getParentFile(), file.getName())) {
             LOGGER.debug("Extracting '{}'",
                     file.getPath());
             FileOutputStream fos = null;
             try {
                 createParentFile(file);
                 fos = new FileOutputStream(file);
                 IOUtils.copy(input, fos);
             } catch (FileNotFoundException ex) {
                 LOGGER.debug("", ex);
                 final String msg = String.format("Unable to find file '%s'.",
                         file.getName());
                 throw new ExtractionException(msg, ex);
             } catch (IOException ex) {
                 LOGGER.debug("", ex);
                 final String msg = String
                         .format("IO Exception while parsing file '%s'.",
                                 file.getName());
                 throw new ExtractionException(msg, ex);
             } finally {
                 FileUtils.close(fos);
             }
         }
     }
 
     /**
      * Ensures the parent path is correctly created on disk so that the file can
      * be extracted to the correct location.
      *
      * @param file the file path
      * @throws ExtractionException thrown if the parent paths could not be
      * created
      */
     private static void createParentFile(final File file)
             throws ExtractionException {
         final File parent = file.getParentFile();
         if (!parent.isDirectory() && !parent.mkdirs()) {
             final String msg = String.format(
                     "Unable to build directory '%s'.",
                     parent.getAbsolutePath());
             throw new ExtractionException(msg);
         }
     }
 
     /**
      * Extracts the file contained in a gzip archive. The extracted file is
      * placed in the exact same path as the file specified.
      *
      * @param file the archive file
      * @throws FileNotFoundException thrown if the file does not exist
      * @throws IOException thrown if there is an error extracting the file.
      */
     public static void extractGzip(File file) throws FileNotFoundException, IOException {
         final String originalPath = file.getPath();
         final File gzip = new File(originalPath + ".gz");
         if (gzip.isFile() && !gzip.delete()) {
             LOGGER.debug("Failed to delete initial temporary file when extracting 'gz' {}", gzip.toString());
             gzip.deleteOnExit();
         }
         if (!file.renameTo(gzip)) {
             throw new IOException("Unable to rename '" + file.getPath() + "'");
         }
         final File newfile = new File(originalPath);
 
         final byte[] buffer = new byte[4096];
 
         GZIPInputStream cin = null;
         FileOutputStream out = null;
         try {
             cin = new GZIPInputStream(new FileInputStream(gzip));
             out = new FileOutputStream(newfile);
 
             int len;
             while ((len = cin.read(buffer)) > 0) {
                 out.write(buffer, 0, len);
             }
         } finally {
             if (cin != null) {
                 try {
                     cin.close();
                 } catch (IOException ex) {
                     LOGGER.trace("ignore", ex);
                 }
             }
             if (out != null) {
                 try {
                     out.close();
                 } catch (IOException ex) {
                     LOGGER.trace("ignore", ex);
                 }
             }
             if (gzip.isFile() && !org.apache.commons.io.FileUtils.deleteQuietly(gzip)) {
                 LOGGER.debug("Failed to delete temporary file when extracting 'gz' {}", gzip.toString());
                 gzip.deleteOnExit();
             }
         }
     }
 }