Improve handling of evaling dependency notation URIs (#1595)

pkl-codegen-java/src/main/kotlin/org/pkl/codegen/java/CliJavaCodeGenerator.kt

@@ -31,7 +31,7 @@ class CliJavaCodeGenerator(private val options: CliJavaCodeGeneratorOptions) :
     val builder = evaluatorBuilder()
     try {
       builder.build().use { evaluator ->
-        for (moduleUri in resolvedSourceModules) {
+        for (moduleUri in options.base.normalizedSourceModules) {
           val schema = evaluator.evaluateSchema(ModuleSource.uri(moduleUri))
           val codeGenerator = JavaCodeGenerator(schema, options.toJavaCodeGeneratorOptions())
           try {