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Only the commands and paths that named an attribute or file of the old flakes: the kde source filter list (nix/linux/root-crates.json), the Windows drift check (windows-default), the KWin effect install checks (linux-*-install), the module evaluation check on a Mac and the VM suites (legacyPackages.<system>.vm.NAME, which are also the heavyChecks for now), and the Windows e2e agent package (windows-komorebi-e2e-agent). docs/dev/flake.md has the full table. The history in docs/dev/unified-binaries.md keeps the names of the time it describes. On the rebase onto wip-cutover-all the coordinator edits of ARCHITECTURE-UNIFIED.md were kept and these two lines applied on top. Verified: not run (documentation).