LOGGER.debug("Failed to delete intial temporary file {}", gzip.toString());
            gzip.deleteOnExit();
        }
        if (!file.renameTo(gzip)) {
            throw new IOException("Unable to rename '" + file.getPath() + "'");
        }
        final File newfile = new File(originalPath);

        final byte[] buffer = new byte[4096];

        GZIPInputStream cin = null;
        FileOutputStream out = null;
        try {
            cin = new GZIPInputStream(new FileInputStream(gzip));
            out = new FileOutputStream(newfile);

            int len;
            while ((len = cin.read(buffer)) > 0) {
                out.write(buffer, 0, len);
            }
        } finally {
            if (cin != null) {
                try {
                    cin.close();
                } catch (IOException ex) {
                    LOGGER.trace("ignore", ex);
                }
            }
            if (out != null) {
                try {
                    out.close();
                } catch (IOException ex) {
                    LOGGER.trace("ignore", ex);
                }
            }
            if (gzip.isFile() && !FileUtils.deleteQuietly(gzip)) {
                LOGGER.debug("Failed to delete temporary file {}", gzip.toString());

    private String getPrettyParseExceptionInfo(SAXParseException ex) {

        final StringBuilder sb = new StringBuilder();

        if (ex.getSystemId() != null) {
            sb.append("systemId=").append(ex.getSystemId()).append(", ");
        }
        if (ex.getPublicId() != null) {
            sb.append("publicId=").append(ex.getPublicId()).append(", ");
        }
        if (ex.getLineNumber() > 0) {
            sb.append("Line=").append(ex.getLineNumber());
        }
        if (ex.getColumnNumber() > 0) {
            sb.append(", Column=").append(ex.getColumnNumber());
        }
        sb.append(": ").append(ex.getMessage());

        return sb.toString();
    }

    /**
     * Logs warnings.
     *
     * @param ex the warning to log
     * @throws SAXException is never thrown
     */
    @Override
    public void warning(SAXParseException ex) throws SAXException {

            schemaStream = this.getClass().getClassLoader().getResourceAsStream(SUPPRESSION_SCHEMA);
            final SuppressionHandler handler = new SuppressionHandler();
            final SAXParserFactory factory = SAXParserFactory.newInstance();
            factory.setNamespaceAware(true);
            factory.setValidating(true);
            final SAXParser saxParser = factory.newSAXParser();
            saxParser.setProperty(SuppressionParser.JAXP_SCHEMA_LANGUAGE, SuppressionParser.W3C_XML_SCHEMA);
            saxParser.setProperty(SuppressionParser.JAXP_SCHEMA_SOURCE, new InputSource(schemaStream));
            final XMLReader xmlReader = saxParser.getXMLReader();
            xmlReader.setErrorHandler(new SuppressionErrorHandler());
            xmlReader.setContentHandler(handler);

            final Reader reader = new InputStreamReader(inputStream, "UTF-8");
            final InputSource in = new InputSource(reader);
            //in.setEncoding("UTF-8");

            xmlReader.parse(in);

            return handler.getSuppressionRules();
        } catch (ParserConfigurationException ex) {
            LOGGER.debug("", ex);
            throw new SuppressionParseException(ex);
        } catch (SAXException ex) {

    public void initializeFileTypeAnalyzer() throws InitializationException {
        try {
            final File baseDir = Settings.getTempDirectory();
            tempFileLocation = File.createTempFile("check", "tmp", baseDir);
            if (!tempFileLocation.delete()) {
                setEnabled(false);
                final String msg = String.format("Unable to delete temporary file '%s'.", tempFileLocation.getAbsolutePath());
                throw new InitializationException(msg);
            }
            if (!tempFileLocation.mkdirs()) {
                setEnabled(false);
                final String msg = String.format("Unable to create directory '%s'.", tempFileLocation.getAbsolutePath());
                throw new InitializationException(msg);
            }
        } catch (IOException ex) {
            setEnabled(false);
            throw new InitializationException("Unable to create a temporary file", ex);
        }
    }

    /**
     * The close method deletes any temporary files and directories created
     * during analysis.
     *
     * @throws Exception thrown if there is an exception deleting temporary
     * files
     */
    @Override
    public void close() throws Exception {