version 1.3.6

Dependency Updates

README.md

@@ -118,4 +118,4 @@ Dependency-Check makes use of several other open source libraries. Please see th
   [wiki]: https://github.com/jeremylong/DependencyCheck/wiki
   [subscribe]: mailto:dependency-check+subscribe@googlegroups.com
   [post]: mailto:dependency-check@googlegroups.com
-  [notices]: https://github.com/jeremylong/DependencyCheck/blob/master/NOTICES.txt
+  [notices]: https://github.com/jeremylong/DependencyCheck/blob/master/NOTICE.txt

dependency-check-ant/README.md

@@ -1,134 +1,25 @@
-Dependency-Check-Gradle
+Dependency-Check Ant Task
 =========
 
-**Working in progress**
+Dependency-Check Ant Task can be used to check the project dependencies for published security vulnerabilities. The checks
+performed are a "best effort" and as such, there could be false positives as well as false negatives. However,
+vulnerabilities in 3rd party components is a well-known problem and is currently documented in the 2013 OWASP
+Top 10 as [A9 - Using Components with Known Vulnerabilities](https://www.owasp.org/index.php/Top_10_2013-A9-Using_Components_with_Known_Vulnerabilities).
 
-This is a DependencyCheck gradle plugin designed for project which use Gradle as build script.
+Documentation and links to production binary releases can be found on the [github pages](http://jeremylong.github.io/DependencyCheck/dependency-check-ant/index.html).
 
-Dependency-Check is a utility that attempts to detect publicly disclosed vulnerabilities contained within project dependencies. It does this by determining if there is a Common Platform Enumeration (CPE) identifier for a given dependency. If found, it will generate a report linking to the associated CVE entries.
+Mailing List
+------------
 
-=========
+Subscribe: [dependency-check+subscribe@googlegroups.com](mailto:dependency-check+subscribe@googlegroups.com)
 
-## What's New
+Post: [dependency-check@googlegroups.com](mailto:dependency-check@googlegroups.com)
-Current latest version is `0.0.8`
 
-## Usage
+Copyright & License
+-------------------
 
-### Step 1, Apply dependency check gradle plugin
+Dependency-Check is Copyright (c) 2012-2014 Jeremy Long. All Rights Reserved.
 
-Install from Maven central repo
+Permission to modify and redistribute is granted under the terms of the Apache 2.0 license. See the [LICENSE.txt](https://raw.githubusercontent.com/jeremylong/DependencyCheck/master/LICENSE.txt) file for the full license.
 
-```groovy
+Dependency-Check-Ant makes use of other open source libraries. Please see the [NOTICE.txt](https://raw.githubusercontent.com/jeremylong/DependencyCheck/master/dependency-check-ant/NOTICE.txt) file for more information.
-buildscript {
-    repositories {
-        mavenCentral()
-    }
-    dependencies {
-        classpath 'org.owasp:dependency-check-gradle:1.3.2'
-    }
-}
-
-apply plugin: 'dependency-check-gradle'
-```
-
-### Step 2, Run gradle task
-
-Once gradle plugin applied, run following gradle task to check dependencies:
-
-```
-gradle dependencyCheck --info
-```
-
-The reports will be generated automatically under `./reports` folder.
-
-If your project includes multiple sub-projects, the report will be generated for each sub-project in different sub-directory.
-
-## FAQ
-
-> **Questions List:**
-> - What if I'm behind a proxy?
-> - What if my project includes multiple sub-project? How can I use this plugin for each of them including the root project?
-> - How to customize the report directory?
-
-### What if I'm behind a proxy?
-
-Maybe you have to use proxy to access internet, in this case, you could configure proxy settings for this plugin:
-
-```groovy
-dependencyCheck {
-    proxy {
-        server = "127.0.0.1"      // required, the server name or IP address of the proxy
-        port = 3128               // required, the port number of the proxy
-
-        // optional, the proxy server might require username
-        // username = "username"
-
-        // optional, the proxy server might require password
-        // password = "password"
-    }
-}
-```
-
-In addition, if the proxy only allow HTTP `GET` or `POST` methods, you will find that the update process will always fail,
- the root cause is that every time you run `dependencyCheck` task, it will try to query the latest timestamp to determine whether need to perform an update action,
- and for performance reason the HTTP method it uses by default is `HEAD`, which probably is disabled or not supported by the proxy. To avoid this problem, you can simply change the HTTP method by below configuration:
-
-```groovy
-dependencyCheck {
-    quickQueryTimestamp = false    // when set to false, it means use HTTP GET method to query timestamp. (default value is true)
-}
-```
-
-### What if my project includes multiple sub-project? How can I use this plugin for each of them including the root project?
-
-Try put 'apply plugin: "dependency-check"' inside the 'allprojects' or 'subprojects' if you'd like to check all sub-projects only, see below:
-
-(1) For all projects including root project:
-
-```groovy
-buildscript {
-  repositories {
-    mavenCentral()
-  }
-  dependencies {
-    classpath "gradle.plugin.com.tools.security:dependency-check:0.0.8"
-  }
-}
-
-allprojects {
-    apply plugin: "dependency-check"
-}
-```
-
-(2) For all sub-projects:
-
-```groovy
-buildscript {
-  repositories {
-    mavenCentral()
-  }
-  dependencies {
-    classpath "gradle.plugin.com.tools.security:dependency-check:0.0.8"
-  }
-}
-
-subprojects {
-    apply plugin: "dependency-check"
-}
-```
-
-In this way, the dependency check will be executed for all projects (including root project) or just sub projects.
-
-### How to customize the report directory?
-
-By default, all reports will be placed under `./reports` folder, to change the default directory, just modify it in the configuration section like this:
-
-```groovy
-subprojects {
-    apply plugin: "dependency-check"
-
-    dependencyCheck {
-        outputDirectory = "./customized-path/security-report"
-    }
-}
-```

dependency-check-ant/pom.xml

@@ -20,7 +20,7 @@ Copyright (c) 2013 - Jeremy Long. All Rights Reserved.
     <parent>
         <groupId>org.owasp</groupId>
         <artifactId>dependency-check-parent</artifactId>
-        <version>1.3.5</version>
+        <version>1.3.6</version>
     </parent>
 
     <artifactId>dependency-check-ant</artifactId>
@@ -256,6 +256,7 @@ Copyright (c) 2013 - Jeremy Long. All Rights Reserved.
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
+                    <argLine>-Dfile.encoding=UTF-8</argLine>
                     <systemProperties>
                         <property>
                             <name>data.directory</name>

dependency-check-cli/README.md

@@ -5,7 +5,7 @@ performed are a "best effort" and as such, there could be false positives as wel
 vulnerabilities in 3rd party components is a well-known problem and is currently documented in the 2013 OWASP
 Top 10 as [A9 - Using Components with Known Vulnerabilities](https://www.owasp.org/index.php/Top_10_2013-A9-Using_Components_with_Known_Vulnerabilities).
 
-Documentation and links to production binary releases can be found on the [github pages](http://jeremylong.github.io/DependencyCheck/dependency-check-cli/installation.html).
+Documentation and links to production binary releases can be found on the [github pages](http://jeremylong.github.io/DependencyCheck/dependency-check-cli/index.html).
 
 Mailing List
 ------------

dependency-check-cli/pom.xml

@@ -20,7 +20,7 @@ Copyright (c) 2012 - Jeremy Long. All Rights Reserved.
     <parent>
         <groupId>org.owasp</groupId>
         <artifactId>dependency-check-parent</artifactId>
-        <version>1.3.5</version>
+        <version>1.3.6</version>
     </parent>
 
     <artifactId>dependency-check-cli</artifactId>
@@ -110,6 +110,7 @@ Copyright (c) 2012 - Jeremy Long. All Rights Reserved.
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
+                    <argLine>-Dfile.encoding=UTF-8</argLine>
                     <systemProperties>
                         <property>
                             <name>cpe</name>

dependency-check-core/pom.xml

@@ -20,7 +20,7 @@ Copyright (c) 2012 Jeremy Long. All Rights Reserved.
     <parent>
         <groupId>org.owasp</groupId>
         <artifactId>dependency-check-parent</artifactId>
-        <version>1.3.5</version>
+        <version>1.3.6</version>
     </parent>
 
     <artifactId>dependency-check-core</artifactId>
@@ -178,6 +178,7 @@ Copyright (c) 2012 Jeremy Long. All Rights Reserved.
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
+                    <argLine>-Dfile.encoding=UTF-8</argLine>
                     <systemProperties>
                         <property>
                             <name>data.directory</name>

dependency-check-core/src/main/java/org/owasp/dependencycheck/analyzer/FileNameAnalyzer.java

@@ -18,7 +18,9 @@
 package org.owasp.dependencycheck.analyzer;
 
 import java.io.File;
+
 import org.apache.commons.io.FilenameUtils;
+import org.apache.commons.io.filefilter.NameFileFilter;
 import org.owasp.dependencycheck.Engine;
 import org.owasp.dependencycheck.analyzer.exception.AnalysisException;
 import org.owasp.dependencycheck.dependency.Confidence;
@@ -65,6 +67,13 @@ public class FileNameAnalyzer extends AbstractAnalyzer implements Analyzer {
     }
     //</editor-fold>
 
+    // Python init files
+    private static final NameFileFilter IGNORED_FILES = new NameFileFilter(new String[] {
+        "__init__.py",
+        "__init__.pyc",
+        "__init__.pyo"
+    });
+
     /**
      * Collects information about the file name.
      *
@@ -102,7 +111,7 @@ public class FileNameAnalyzer extends AbstractAnalyzer implements Analyzer {
                     fileName, Confidence.HIGHEST);
             dependency.getVendorEvidence().addEvidence("file", "name",
                     fileName, Confidence.HIGHEST);
-        } else {
+        } else if (!IGNORED_FILES.accept(f)) {
             dependency.getProductEvidence().addEvidence("file", "name",
                     fileName, Confidence.HIGH);
             dependency.getVendorEvidence().addEvidence("file", "name",

dependency-check-core/src/main/java/org/owasp/dependencycheck/analyzer/PythonPackageAnalyzer.java

@@ -185,7 +185,7 @@ public class PythonPackageAnalyzer extends AbstractFileTypeAnalyzer {
         if (found) {
             dependency.setDisplayFileName(parentName + "/__init__.py");
             dependency.getProductEvidence().addEvidence(file.getName(),
-                    "PackageName", parentName, Confidence.MEDIUM);
+                    "PackageName", parentName, Confidence.HIGH);
         } else {
             // copy, alter and set in case some other thread is iterating over
             final List<Dependency> dependencies = new ArrayList<Dependency>(

dependency-check-core/src/main/java/org/owasp/dependencycheck/analyzer/RubyBundleAuditAnalyzer.java

@@ -83,6 +83,7 @@ public class RubyBundleAuditAnalyzer extends AbstractFileTypeAnalyzer {
         final ProcessBuilder builder = new ProcessBuilder(args);
         builder.directory(folder);
         try {
+        	LOGGER.info("Launching: " + args + " from " + folder);
             return builder.start();
         } catch (IOException ioe) {
             throw new AnalysisException("bundle-audit failure", ioe);
@@ -97,7 +98,16 @@ public class RubyBundleAuditAnalyzer extends AbstractFileTypeAnalyzer {
     @Override
     public void initializeFileTypeAnalyzer() throws Exception {
         // Now, need to see if bundle-audit actually runs from this location.
-        Process process = launchBundleAudit(Settings.getTempDirectory());
+    	Process process = null;
+    	try {
+	        process = launchBundleAudit(Settings.getTempDirectory());
+    	}
+    	catch(AnalysisException ae) {
+    		LOGGER.warn("Exception from bundle-audit process: {}. Disabling {}", ae.getCause(), ANALYZER_NAME);
+            setEnabled(false);
+            throw ae;
+    	}
+    	
         int exitValue = process.waitFor();
         if (0 == exitValue) {
             LOGGER.warn("Unexpected exit code from bundle-audit process. Disabling {}: {}", ANALYZER_NAME, exitValue);
@@ -125,6 +135,7 @@ public class RubyBundleAuditAnalyzer extends AbstractFileTypeAnalyzer {
                 }
             }
         }
+    	
         if (isEnabled()) {
             LOGGER.info(ANALYZER_NAME + " is enabled. It is necessary to manually run \"bundle-audit update\" "
                     + "occasionally to keep its database up to date.");
@@ -194,6 +205,11 @@ public class RubyBundleAuditAnalyzer extends AbstractFileTypeAnalyzer {
         }
         BufferedReader rdr = null;
         try {
+        	BufferedReader errReader = new BufferedReader(new InputStreamReader(process.getErrorStream(), "UTF-8"));
+        	while(errReader.ready()) {
+        		String error = errReader.readLine();
+        		LOGGER.warn(error);
+        	}
             rdr = new BufferedReader(new InputStreamReader(process.getInputStream(), "UTF-8"));
             processBundlerAuditOutput(dependency, engine, rdr);
         } catch (IOException ioe) {

dependency-check-core/src/main/resources/data/initialize_mysql.sql

@@ -25,7 +25,8 @@ CREATE TABLE cpeEntry (id INT auto_increment PRIMARY KEY, cpe VARCHAR(250), vend
 
 CREATE TABLE software (cveid INT, cpeEntryId INT, previousVersion VARCHAR(50)
     , CONSTRAINT fkSoftwareCve FOREIGN KEY (cveid) REFERENCES vulnerability(id) ON DELETE CASCADE
-    , CONSTRAINT fkSoftwareCpeProduct FOREIGN KEY (cpeEntryId) REFERENCES cpeEntry(id));
+    , CONSTRAINT fkSoftwareCpeProduct FOREIGN KEY (cpeEntryId) REFERENCES cpeEntry(id)
+    , PRIMARY KEY (cveid, cpeEntryId));
 
 CREATE INDEX idxVulnerability ON vulnerability(cve);
 CREATE INDEX idxReference ON reference(cveid);

dependency-check-core/src/main/resources/data/initialize_oracle.sql

@@ -97,6 +97,7 @@ FOR EACH ROW
 BEGIN
   :new.ID := VULNERABILITY_SEQ.nextval;
 END VULNERABILITY_TRG;
+/
 
 CREATE OR REPLACE TRIGGER CPEENTRY_TRG
 BEFORE INSERT
@@ -106,4 +107,6 @@ FOR EACH ROW
 BEGIN
   :new.ID := CPEENTRY_SEQ.nextval;
 END CPEENTRY_TRG;
+/
 
+INSERT INTO properties(id,value) VALUES ('version','3.0');

dependency-check-core/src/main/resources/dependencycheck-base-suppression.xml

@@ -298,6 +298,13 @@
         <gav regex="true">io\.dropwizard\.metrics:metrics-httpclient:.*</gav>
         <cpe>cpe:/a:apache:httpclient</cpe>
     </suppress>
+    <suppress base="true">
+        <notes><![CDATA[
+        javax.transaction false positives
+        ]]></notes>
+        <gav regex="true">javax\.transaction:javax\.transaction-api:.*</gav>
+        <cpe>cpe:/a:oracle:glassfish</cpe>
+    </suppress>
     <suppress base="true">
         <notes><![CDATA[
         false positive in drop wizard

dependency-check-core/src/main/resources/schema/suppression.xsd

@@ -21,7 +21,7 @@
     </xs:simpleType>
     <xs:simpleType name="cveType">
         <xs:restriction base="xs:string">
-            <xs:pattern value="(\w+\-)?CVE\-\d\d\d\d\-\d+"/>
+            <xs:pattern value="((\w+\-)?CVE\-\d\d\d\d\-\d+|\d+)"/>
         </xs:restriction>
     </xs:simpleType>
     <xs:simpleType name="sha1Type">

dependency-check-core/src/test/java/org/owasp/dependencycheck/analyzer/RubyBundleAuditAnalyzerTest.java

@@ -17,6 +17,12 @@
  */
 package org.owasp.dependencycheck.analyzer;
 
+import static org.hamcrest.CoreMatchers.is;
+import static org.junit.Assert.assertThat;
+import static org.junit.Assert.assertTrue;
+
+import java.io.File;
+
 import org.junit.After;
 import org.junit.Assume;
 import org.junit.Before;
@@ -26,15 +32,10 @@ import org.owasp.dependencycheck.Engine;
 import org.owasp.dependencycheck.analyzer.exception.AnalysisException;
 import org.owasp.dependencycheck.data.nvdcve.DatabaseException;
 import org.owasp.dependencycheck.dependency.Dependency;
+import org.owasp.dependencycheck.utils.Settings;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import java.io.File;
-
-import static org.hamcrest.CoreMatchers.is;
-import static org.hamcrest.CoreMatchers.not;
-import static org.junit.Assert.assertThat;
-
 /**
  * Unit tests for {@link RubyBundleAuditAnalyzer}.
  *
@@ -56,14 +57,9 @@ public class RubyBundleAuditAnalyzerTest extends BaseTest {
      */
     @Before
     public void setUp() throws Exception {
-        try {
+    	Settings.initialize();
-            analyzer = new RubyBundleAuditAnalyzer();
+        analyzer = new RubyBundleAuditAnalyzer();
-            analyzer.setFilesMatched(true);
+        analyzer.setFilesMatched(true);
-            analyzer.initialize();
-        } catch (Exception e) {
-            //LOGGER.warn("Exception setting up RubyBundleAuditAnalyzer. Tests will be incomplete", e);
-            Assume.assumeNoException("Exception setting up RubyBundleAuditAnalyzer; bundle audit may not be installed. Tests will be incomplete", e);
-        }
     }
 
     /**
@@ -73,6 +69,7 @@ public class RubyBundleAuditAnalyzerTest extends BaseTest {
      */
     @After
     public void tearDown() throws Exception {
+    	Settings.cleanup();
         analyzer.close();
         analyzer = null;
     }
@@ -100,10 +97,44 @@ public class RubyBundleAuditAnalyzerTest extends BaseTest {
      */
     @Test
     public void testAnalysis() throws AnalysisException, DatabaseException {
-        final Dependency result = new Dependency(BaseTest.getResourceAsFile(this,
+    	try {
-                "ruby/vulnerable/Gemfile.lock"));
+            analyzer.initialize();
-        final Engine engine = new Engine();
+
-        analyzer.analyze(result, engine);
+            final Dependency result = new Dependency(BaseTest.getResourceAsFile(this,
-        assertThat(engine.getDependencies().size(), is(not(0)));
+                    "ruby/vulnerable/gems/rails-4.1.15/Gemfile.lock"));
+            final Engine engine = new Engine();
+            analyzer.analyze(result, engine);
+            int size = engine.getDependencies().size();
+            assertThat(size, is(1));
+            
+            Dependency dependency = engine.getDependencies().get(0);
+            assertTrue(dependency.getProductEvidence().toString().toLowerCase().contains("redcarpet"));
+            assertTrue(dependency.getVersionEvidence().toString().toLowerCase().contains("2.2.2"));
+            
+        } catch (Exception e) {
+            LOGGER.warn("Exception setting up RubyBundleAuditAnalyzer. Make sure Ruby gem bundle-audit is installed. You may also need to set property \"analyzer.bundle.audit.path\".", e);
+            Assume.assumeNoException("Exception setting up RubyBundleAuditAnalyzer; bundle audit may not be installed, or property \"analyzer.bundle.audit.path\" may not be set.", e);
+        }
+    }
+
+    /**
+     * Test when Ruby bundle-audit is not available on the system.
+     *
+     * @throws AnalysisException is thrown when an exception occurs.
+     */
+    @Test
+    public void testMissingBundleAudit() throws AnalysisException, DatabaseException {
+    	//set a non-exist bundle-audit
+        Settings.setString(Settings.KEYS.ANALYZER_BUNDLE_AUDIT_PATH, "phantom-bundle-audit");
+        try {
+            //initialize should fail.
+			analyzer.initialize();
+		} catch (Exception e) {
+			//expected, so ignore.
+		}
+        finally {
+	        assertThat(analyzer.isEnabled(), is(false));
+			LOGGER.info("phantom-bundle-audit is not available. Ruby Bundle Audit Analyzer is disabled as expected.");
+        }
     }
 }

dependency-check-core/src/test/resources/dependencycheck.properties

@@ -100,3 +100,5 @@ analyzer.nexus.enabled=false
 #whether the nexus analyzer uses the proxy
 analyzer.nexus.proxy=true
 
+#Use your own bundle-audit install directory.
+#analyzer.bundle.audit.path=/usr/local/bin/bundle-audit

dependency-check-core/src/test/resources/ruby/vulnerable/gems/rails-4.1.15/Gemfile

@@ -0,0 +1,102 @@
+source 'https://rubygems.org'
+
+gemspec
+
+# This needs to be with require false as it is
+# loaded after loading the test library to
+# ensure correct loading order
+gem 'mocha', '~> 0.14', require: false
+
+gem 'rack-cache', '~> 1.2'
+gem 'jquery-rails', '~> 3.1.0'
+gem 'turbolinks'
+gem 'coffee-rails', '~> 4.0.0'
+
+gem 'sprockets', '~> 3.0.0.rc.1'
+
+# require: false so bcrypt is loaded only when has_secure_password is used.
+# This is to avoid ActiveModel (and by extension the entire framework)
+# being dependent on a binary library.
+gem 'bcrypt', '~> 3.1.7', require: false
+
+# This needs to be with require false to avoid
+# it being automatically loaded by sprockets
+gem 'uglifier', '>= 1.3.0', require: false
+
+group :doc do
+  gem 'sdoc', '~> 0.4.0'
+  gem 'redcarpet', '~> 2.2.2', platforms: :ruby
+  gem 'w3c_validators'
+  gem 'kindlerb', '0.1.1'
+  gem 'mustache', '~> 0.99.8'
+end
+
+# AS
+gem 'dalli', '>= 2.2.1'
+
+# Add your own local bundler stuff
+local_gemfile = File.dirname(__FILE__) + "/.Gemfile"
+instance_eval File.read local_gemfile if File.exist? local_gemfile
+
+group :test do
+  # FIX: Our test suite isn't ready to run in random order yet
+  gem 'minitest', '< 5.3.4'
+
+  platforms :mri_19 do
+    gem 'ruby-prof', '~> 0.11.2'
+  end
+
+  # platforms :mri_19, :mri_20 do
+  #   gem 'debugger'
+  # end
+
+  platforms :mri do
+    gem 'stackprof'
+  end
+
+  gem 'benchmark-ips'
+end
+
+platforms :ruby do
+  gem 'nokogiri', '>= 1.4.5'
+
+  # Needed for compiling the ActionDispatch::Journey parser
+  gem 'racc', '>=1.4.6', require: false
+
+  # AR
+  gem 'sqlite3', '~> 1.3.6'
+
+  group :db do
+    gem 'pg', '>= 0.11.0'
+    gem 'mysql', '>= 2.9.0'
+    gem 'mysql2', '>= 0.3.13', '< 0.4'
+  end
+end
+
+platforms :jruby do
+  gem 'json'
+  if ENV['AR_JDBC']
+    gem 'activerecord-jdbcsqlite3-adapter', github: 'jruby/activerecord-jdbc-adapter', branch: 'master'
+    group :db do
+      gem 'activerecord-jdbcmysql-adapter', github: 'jruby/activerecord-jdbc-adapter', branch: 'master'
+      gem 'activerecord-jdbcpostgresql-adapter', github: 'jruby/activerecord-jdbc-adapter', branch: 'master'
+    end
+  else
+    gem 'activerecord-jdbcsqlite3-adapter', '>= 1.3.0'
+    group :db do
+      gem 'activerecord-jdbcmysql-adapter', '>= 1.3.0'
+      gem 'activerecord-jdbcpostgresql-adapter', '>= 1.3.0'
+    end
+  end
+end
+
+# gems that are necessary for ActiveRecord tests with Oracle database
+if ENV['ORACLE_ENHANCED']
+  platforms :ruby do
+    gem 'ruby-oci8', '>= 2.0.4'
+  end
+  gem 'activerecord-oracle_enhanced-adapter', github: 'rsim/oracle-enhanced', branch: 'master'
+end
+
+# A gem necessary for ActiveRecord tests with IBM DB
+gem 'ibm_db' if ENV['IBM_DB']

dependency-check-core/src/test/resources/ruby/vulnerable/gems/rails-4.1.15/Gemfile.lock

@@ -0,0 +1,154 @@
+PATH
+  remote: .
+  specs:
+    actionmailer (4.1.15)
+      actionpack (= 4.1.15)
+      actionview (= 4.1.15)
+      mail (~> 2.5, >= 2.5.4)
+    actionpack (4.1.15)
+      actionview (= 4.1.15)
+      activesupport (= 4.1.15)
+      rack (~> 1.5.2)
+      rack-test (~> 0.6.2)
+    actionview (4.1.15)
+      activesupport (= 4.1.15)
+      builder (~> 3.1)
+      erubis (~> 2.7.0)
+    activemodel (4.1.15)
+      activesupport (= 4.1.15)
+      builder (~> 3.1)
+    activerecord (4.1.15)
+      activemodel (= 4.1.15)
+      activesupport (= 4.1.15)
+      arel (~> 5.0.0)
+    activesupport (4.1.15)
+      i18n (~> 0.6, >= 0.6.9)
+      json (~> 1.7, >= 1.7.7)
+      minitest (~> 5.1)
+      thread_safe (~> 0.1)
+      tzinfo (~> 1.1)
+    rails (4.1.15)
+      actionmailer (= 4.1.15)
+      actionpack (= 4.1.15)
+      actionview (= 4.1.15)
+      activemodel (= 4.1.15)
+      activerecord (= 4.1.15)
+      activesupport (= 4.1.15)
+      bundler (>= 1.3.0, < 2.0)
+      railties (= 4.1.15)
+      sprockets-rails (~> 2.0)
+    railties (4.1.15)
+      actionpack (= 4.1.15)
+      activesupport (= 4.1.15)
+      rake (>= 0.8.7)
+      thor (>= 0.18.1, < 2.0)
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    arel (5.0.1.20140414130214)
+    bcrypt (3.1.10)
+    benchmark-ips (2.3.0)
+    builder (3.2.2)
+    coffee-rails (4.0.1)
+      coffee-script (>= 2.2.0)
+      railties (>= 4.0.0, < 5.0)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.10.0)
+    dalli (2.7.5)
+    erubis (2.7.0)
+    execjs (2.6.0)
+    i18n (0.7.0)
+    jquery-rails (3.1.4)
+      railties (>= 3.0, < 5.0)
+      thor (>= 0.14, < 2.0)
+    json (1.8.3)
+    kindlerb (0.1.1)
+      mustache
+      nokogiri
+    mail (2.6.3)
+      mime-types (>= 1.16, < 3)
+    metaclass (0.0.4)
+    mime-types (2.99.1)
+    mini_portile2 (2.0.0)
+    minitest (5.3.3)
+    mocha (0.14.0)
+      metaclass (~> 0.0.1)
+    mustache (0.99.8)
+    mysql (2.9.1)
+    mysql2 (0.3.20)
+    nokogiri (1.6.7.2)
+      mini_portile2 (~> 2.0.0.rc2)
+    pg (0.18.4)
+    racc (1.4.14)
+    rack (1.5.5)
+    rack-cache (1.5.1)
+      rack (>= 0.4)
+    rack-test (0.6.3)
+      rack (>= 1.0)
+    rake (10.5.0)
+    rdoc (4.2.1)
+    redcarpet (2.2.2)
+    ruby-prof (0.11.3)
+    sdoc (0.4.1)
+      json (~> 1.7, >= 1.7.7)
+      rdoc (~> 4.0)
+    sprockets (3.0.3)
+      rack (~> 1.0)
+    sprockets-rails (2.3.3)
+      actionpack (>= 3.0)
+      activesupport (>= 3.0)
+      sprockets (>= 2.8, < 4.0)
+    sqlite3 (1.3.11)
+    stackprof (0.2.8)
+    thor (0.19.1)
+    thread_safe (0.3.5)
+    turbolinks (2.5.3)
+      coffee-rails
+    tzinfo (1.2.2)
+      thread_safe (~> 0.1)
+    uglifier (2.7.2)
+      execjs (>= 0.3.0)
+      json (>= 1.8.0)
+    w3c_validators (1.2)
+      json
+      nokogiri
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  activerecord-jdbcmysql-adapter (>= 1.3.0)
+  activerecord-jdbcpostgresql-adapter (>= 1.3.0)
+  activerecord-jdbcsqlite3-adapter (>= 1.3.0)
+  bcrypt (~> 3.1.7)
+  benchmark-ips
+  coffee-rails (~> 4.0.0)
+  dalli (>= 2.2.1)
+  jquery-rails (~> 3.1.0)
+  json
+  kindlerb (= 0.1.1)
+  minitest (< 5.3.4)
+  mocha (~> 0.14)
+  mustache (~> 0.99.8)
+  mysql (>= 2.9.0)
+  mysql2 (>= 0.3.13, < 0.4)
+  nokogiri (>= 1.4.5)
+  pg (>= 0.11.0)
+  racc (>= 1.4.6)
+  rack-cache (~> 1.2)
+  rails!
+  redcarpet (~> 2.2.2)
+  ruby-prof (~> 0.11.2)
+  sdoc (~> 0.4.0)
+  sprockets (~> 3.0.0.rc.1)
+  sqlite3 (~> 1.3.6)
+  stackprof
+  turbolinks
+  uglifier (>= 1.3.0)
+  w3c_validators
+
+BUNDLED WITH
+   1.11.2

dependency-check-maven/pom.xml

@@ -20,12 +20,11 @@ Copyright (c) 2013 Jeremy Long. All Rights Reserved.
     <parent>
         <groupId>org.owasp</groupId>
         <artifactId>dependency-check-parent</artifactId>
-        <version>1.3.5</version>
+        <version>1.3.6</version>
     </parent>
 
     <artifactId>dependency-check-maven</artifactId>
     <packaging>maven-plugin</packaging>
-
     <name>Dependency-Check Maven Plugin</name>
     <description>dependency-check-maven is a Maven Plugin that uses dependency-check-core to detect publicly disclosed vulnerabilities associated with the project's dependencies. The plugin will generate a report listing the dependency, any identified Common Platform Enumeration (CPE) identifiers, and the associated Common Vulnerability and Exposure (CVE) entries.</description>
     <inceptionYear>2013</inceptionYear>
@@ -88,6 +87,7 @@ Copyright (c) 2013 Jeremy Long. All Rights Reserved.
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
+                    <argLine>-Dfile.encoding=UTF-8</argLine>
                     <systemProperties>
                         <property>
                             <name>data.directory</name>

dependency-check-maven/src/main/java/org/owasp/dependencycheck/maven/AggregateMojo.java

@@ -128,7 +128,7 @@ public class AggregateMojo extends BaseDependencyCheckMojo {
     /**
      * Gets the last project in the reactor - taking into account skipped projects.
      *
-     * @return the last projecct in the reactor
+     * @return the last project in the reactor
      */
     private MavenProject getLastProject() {
         for (int x = getReactorProjects().size() - 1; x >= 0; x--) {
@@ -149,7 +149,7 @@ public class AggregateMojo extends BaseDependencyCheckMojo {
      */
     private boolean skipProject(MavenProject project) {
         final String skip = (String) project.getProperties().get("maven.site.skip");
-        return "true".equalsIgnoreCase(skip);
+        return "true".equalsIgnoreCase(skip) && isGeneratingSite();
     }
 
     /**

dependency-check-maven/src/main/java/org/owasp/dependencycheck/maven/BaseDependencyCheckMojo.java

@@ -387,6 +387,7 @@ public abstract class BaseDependencyCheckMojo extends AbstractMojo implements Ma
      */
     @Override
     public void execute() throws MojoExecutionException, MojoFailureException {
+        generatingSite = false;
         if (skip) {
             getLog().info("Skipping " + getName(Locale.US));
         } else {
@@ -424,6 +425,20 @@ public abstract class BaseDependencyCheckMojo extends AbstractMojo implements Ma
         generate((Sink) sink, locale);
     }
 
+    /**
+     * A flag indicating whether or not the maven site is being generated.
+     */
+    private boolean generatingSite = false;
+
+    /**
+     * Returns true if the Maven site is being generated.
+     *
+     * @return true if the Maven site is being generated
+     */
+    protected boolean isGeneratingSite() {
+        return generatingSite;
+    }
+
     /**
      * Generates the Dependency-Check Site Report.
      *
@@ -432,6 +447,7 @@ public abstract class BaseDependencyCheckMojo extends AbstractMojo implements Ma
      * @throws MavenReportException if a maven report exception occurs
      */
     public void generate(Sink sink, Locale locale) throws MavenReportException {
+        generatingSite = true;
         try {
             validateAggregate();
         } catch (MojoExecutionException ex) {
@@ -1054,7 +1070,8 @@ public abstract class BaseDependencyCheckMojo extends AbstractMojo implements Ma
                     "org.owasp.dependencycheck.dependency.Reference",
                     "org.owasp.dependencycheck.dependency.Vulnerability",
                     "org.owasp.dependencycheck.dependency.VulnerabilityComparator",
-                    "org.owasp.dependencycheck.dependency.VulnerableSoftware");
+                    "org.owasp.dependencycheck.dependency.VulnerableSoftware",
+                    "org.owasp.dependencycheck.data.cpe.IndexEntry");
             ret = (List<Dependency>) ois.readObject();
         } catch (FileNotFoundException ex) {
             //TODO fix logging

dependency-check-maven/src/site/markdown/index.md.vm

@@ -156,8 +156,8 @@ Create the DependencyCheck-report.html and use internal mirroring of CVE content
                 <artifactId>dependency-check-maven</artifactId>
                 <version>${project.version}</version>
                 <configuration>
-                    <cveUrl12Modified>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-modified.xml</cveUrl12Modified>
+                    <cveUrl12Modified>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-Modified.xml.gz</cveUrl12Modified>
-                    <cveUrl20Modified>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-2.0-modified.xml</cveUrl20Modified>
+                    <cveUrl20Modified>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-2.0-Modified.xml.gz</cveUrl20Modified>
                     <cveUrl12Base>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-%d.xml</cveUrl12Base>
                     <cveUrl20Base>http://internal-mirror.mycorp.com/downloads/nist/nvdcve-2.0-%d.xml</cveUrl20Base>
                 </configuration>

dependency-check-utils/pom.xml

@@ -20,7 +20,7 @@ Copyright (c) 2014 - Jeremy Long. All Rights Reserved.
     <parent>
         <groupId>org.owasp</groupId>
         <artifactId>dependency-check-parent</artifactId>
-        <version>1.3.5</version>
+        <version>1.3.6</version>
     </parent>
 
     <artifactId>dependency-check-utils</artifactId>
@@ -77,6 +77,7 @@ Copyright (c) 2014 - Jeremy Long. All Rights Reserved.
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
+                    <argLine>-Dfile.encoding=UTF-8</argLine>
                     <systemProperties>
                         <property>
                             <name>data.directory</name>

dependency-check-utils/src/main/java/org/owasp/dependencycheck/utils/ExpectedOjectInputStream.java

@@ -63,7 +63,7 @@ public class ExpectedOjectInputStream extends ObjectInputStream {
     @Override
     protected Class<?> resolveClass(ObjectStreamClass desc) throws IOException, ClassNotFoundException {
         if (!this.expected.contains(desc.getName())) {
-            throw new InvalidClassException("Unexpected deserialization", desc.getName());
+            throw new InvalidClassException("Unexpected deserialization ", desc.getName());
         }
         return super.resolveClass(desc);
     }

dependency-check-utils/src/main/java/org/owasp/dependencycheck/utils/Settings.java

@@ -743,7 +743,9 @@ public final class Settings {
         try {
             value = Integer.parseInt(Settings.getString(key));
         } catch (NumberFormatException ex) {
-            LOGGER.trace("Could not convert property '{}' to an int.", key, ex);
+            if (!Settings.getString(key, "").isEmpty()) {
+                LOGGER.debug("Could not convert property '{}={}' to an int; using {} instead.", key, Settings.getString(key), defaultValue);
+            }
             value = defaultValue;
         }
         return value;

dependency-check-utils/src/test/java/org/owasp/dependencycheck/utils/SettingsTest.java

@@ -139,6 +139,18 @@ public class SettingsTest extends BaseTest {
         Assert.assertEquals(expResult, result);
     }
 
+    /**
+     * Test of getInt method, of class Settings.
+     */
+    @Test
+    public void testGetIntDefault() throws InvalidSettingException {
+        String key = "SomeKey";
+        int expResult = 85;
+        Settings.setString(key, "blue");
+        int result = Settings.getInt(key, expResult);
+        Assert.assertEquals(expResult, result);
+    }
+
     /**
      * Test of getLong method, of class Settings.
      */

pom.xml

@@ -20,7 +20,7 @@ Copyright (c) 2012 - Jeremy Long
 
     <groupId>org.owasp</groupId>
     <artifactId>dependency-check-parent</artifactId>
-    <version>1.3.5</version>
+    <version>1.3.6</version>
     <packaging>pom</packaging>
 
     <modules>
@@ -125,8 +125,8 @@ Copyright (c) 2012 - Jeremy Long
         <!-- new versions of lucene are compiled with JDK 1.7 and cannot be used ubiquitously in Jenkins
         thus, we cannot upgrade beyond 4.7.2 -->
         <apache.lucene.version>4.7.2</apache.lucene.version>
-        <slf4j.version>1.7.16</slf4j.version>
+        <slf4j.version>1.7.21</slf4j.version>
-        <logback.version>1.1.5</logback.version>
+        <logback.version>1.1.7</logback.version>
         <reporting.checkstyle-plugin.version>2.17</reporting.checkstyle-plugin.version>
         <reporting.cobertura-plugin.version>2.7</reporting.cobertura-plugin.version>
         <reporting.pmd-plugin.version>3.6</reporting.pmd-plugin.version>
@@ -445,7 +445,7 @@ Copyright (c) 2012 - Jeremy Long
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-project-info-reports-plugin</artifactId>
-                <version>2.8.1</version>
+                <version>2.9</version>
                 <reportSets>
                     <reportSet>
                         <reports>
@@ -589,7 +589,7 @@ Copyright (c) 2012 - Jeremy Long
             <dependency>
                 <groupId>org.apache.commons</groupId>
                 <artifactId>commons-compress</artifactId>
-                <version>1.10</version>
+                <version>1.11</version>
             </dependency>
             <dependency>
                 <groupId>org.apache.ant</groupId>
@@ -636,11 +636,6 @@ Copyright (c) 2012 - Jeremy Long
                 <artifactId>maven-settings</artifactId>
                 <version>3.3.3</version>
             </dependency>
-            <dependency>
-                <groupId>org.apache.maven.plugins</groupId>
-                <artifactId>maven-site-plugin</artifactId>
-                <version>3.4</version>
-            </dependency>
             <dependency>
                 <groupId>org.apache.maven.plugin-testing</groupId>
                 <artifactId>maven-plugin-testing-harness</artifactId>
@@ -656,6 +651,12 @@ Copyright (c) 2012 - Jeremy Long
                 <artifactId>maven-reporting-api</artifactId>
                 <version>3.0</version>
             </dependency>
+            <!-- Upgrading transitive commons-collections-3.2.1 from velocity-1.7. -->
+            <dependency>
+                <groupId>commons-collections</groupId>
+                <artifactId>commons-collections</artifactId>
+                <version>3.2.2</version>
+            </dependency>
             <dependency>
                 <groupId>org.apache.velocity</groupId>
                 <artifactId>velocity</artifactId>
@@ -680,7 +681,7 @@ Copyright (c) 2012 - Jeremy Long
             <dependency>
                 <groupId>org.jmockit</groupId>
                 <artifactId>jmockit</artifactId>
-                <version>1.21</version>
+                <version>1.22</version>
                 <scope>test</scope>
             </dependency>
             <dependency>

src/site/markdown/dependency-check-gradle/configuration-purge.md

@@ -4,7 +4,7 @@ Tasks
 Task                                                | Description
 ----------------------------------------------------|-----------------------
 [dependencyCheck](configuration.html)               | Runs dependency-check against the project and generates a report.
-[dependencyCheckUpdate]](configuration-update.html) | Updates the local cache of the NVD data from NIST.
+[dependencyCheckUpdate](configuration-update.html)  | Updates the local cache of the NVD data from NIST.
 dependencyCheckPurge                                | Deletes the local copy of the NVD. This is used to force a refresh of the data.
 
 Configuration: dependencyCheckPurge
@@ -24,7 +24,7 @@ Config Group | Property          | Description
 -------------|-------------------|---------------------------------------------------------------------------------------------|------------------
 data         | directory         | Sets the data directory to hold SQL CVEs contents. This should generally not be changed.    |  
 
-$H$H$H$H Example
+#### Example
 ```groovy
 dependencyCheckPurge {
     data {