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Jeremy Long
2015-11-29 07:44:14 -05:00
parent 191c5fae56
commit a426de69cd
1220 changed files with 51071 additions and 40455 deletions
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dependency-check-core/cobertura/org.owasp.dependencycheck.analyzer.ArchiveAnalyzer.html
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@@ -12,7 +12,7 @@
<div class="separator">&nbsp;</div>
<table class="report">
<thead><tr> <td class="heading">Classes in this File</td> <td class="heading"><a class="dfn" href="help.html" onclick="popupwindow('help.html'); return false;">Line Coverage</a></td> <td class="heading"><a class="dfn" href="help.html" onclick="popupwindow('help.html'); return false;">Branch Coverage</a></td> <td class="heading"><a class="dfn" href="help.html" onclick="popupwindow('help.html'); return false;">Complexity</a></td></tr></thead>
<tr><td><a href="org.owasp.dependencycheck.analyzer.ArchiveAnalyzer.html">ArchiveAnalyzer</a></td><td><table cellpadding="0px" cellspacing="0px" class="percentgraph"><tr class="percentgraph"><td align="right" class="percentgraph" width="40">37%</td><td class="percentgraph"><div class="percentgraph"><div class="greenbar" style="width:37px"><span class="text">72/193</span></div></div></td></tr></table></td><td><table cellpadding="0px" cellspacing="0px" class="percentgraph"><tr class="percentgraph"><td align="right" class="percentgraph" width="40">25%</td><td class="percentgraph"><div class="percentgraph"><div class="greenbar" style="width:25px"><span class="text">22/88</span></div></div></td></tr></table></td><td class="value"><span class="hidden">5.125;</span>5.125</td></tr>
<tr><td><a href="org.owasp.dependencycheck.analyzer.ArchiveAnalyzer.html">ArchiveAnalyzer</a></td><td><table cellpadding="0px" cellspacing="0px" class="percentgraph"><tr class="percentgraph"><td align="right" class="percentgraph" width="40">37%</td><td class="percentgraph"><div class="percentgraph"><div class="greenbar" style="width:37px"><span class="text">72/194</span></div></div></td></tr></table></td><td><table cellpadding="0px" cellspacing="0px" class="percentgraph"><tr class="percentgraph"><td align="right" class="percentgraph" width="40">24%</td><td class="percentgraph"><div class="percentgraph"><div class="greenbar" style="width:24px"><span class="text">22/90</span></div></div></td></tr></table></td><td class="value"><span class="hidden">5.1875;</span>5.188</td></tr>
</table>
<div class="separator">&nbsp;</div>
@@ -237,8 +237,8 @@
<td class="src"><pre class="src">&nbsp; <span class="keyword">static</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;115</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> String additionalZipExt = Settings.getString(Settings.KEYS.ADDITIONAL_ZIP_EXTENSIONS);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;116</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">if</span> (additionalZipExt != <span class="keyword">null</span>) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;117</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> Set&lt;String&gt; ext = <span class="keyword">new</span> HashSet&lt;String&gt;(Collections.singletonList(additionalZipExt));</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;118</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; ZIPPABLES.addAll(ext);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;117</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String[] ext = additionalZipExt.split(<span class="string">"\\s*,\\s*"</span>);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;118</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; Collections.addAll(ZIPPABLES, ext);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;119</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;120</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; EXTENSIONS.addAll(ZIPPABLES);</pre></td></tr>
@@ -378,476 +378,477 @@
<tr> <td class="numLineCover">&nbsp;195</td> <td class="nbHitsUncovered"><a title="Line 195: Conditional coverage 50% (2/4) [each condition: 50%, 50%].">&nbsp;1</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 195: Conditional coverage 50% (2/4) [each condition: 50%, 50%]."> <span class="keyword">if</span> (tempFileLocation != <span class="keyword">null</span> &amp;&amp; tempFileLocation.exists()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;196</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; LOGGER.debug(<span class="string">"Attempting to delete temporary files"</span>);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;197</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> <span class="keyword">boolean</span> success = FileUtils.delete(tempFileLocation);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;198</td> <td class="nbHitsUncovered"><a title="Line 198: Conditional coverage 16% (1/6) [each condition: 50%, 0%, 0%].">&nbsp;1</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 198: Conditional coverage 16% (1/6) [each condition: 50%, 0%, 0%]."> <span class="keyword">if</span> (!success &amp;&amp; tempFileLocation.exists() &amp;&amp; tempFileLocation.list().length &gt; 0) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;199</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Failed to delete some temporary files, see the log for more details"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;200</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;201</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;202</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;198</td> <td class="nbHitsUncovered"><a title="Line 198: Conditional coverage 25% (1/4) [each condition: 50%, 0%].">&nbsp;1</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 198: Conditional coverage 25% (1/4) [each condition: 50%, 0%]."> <span class="keyword">if</span> (!success &amp;&amp; tempFileLocation.exists()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;199</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String[] l = tempFileLocation.list();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;200</td> <td class="nbHitsUncovered"><a title="Line 200: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 200: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (l != <span class="keyword">null</span> &amp;&amp; l.length &gt; 0) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;201</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Failed to delete some temporary files, see the log for more details"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;202</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;203</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;204</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;205</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Analyzes a given dependency. If the dependency is an archive, such as a WAR or EAR, the contents are extracted, scanned,</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;205</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;206</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * and added to the list of dependencies within the engine.</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;207</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;208</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the dependency to analyze</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Analyzes a given dependency. If the dependency is an archive, such as a WAR or EAR, the contents are extracted, scanned,</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;209</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the engine scanning</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * and added to the list of dependencies within the engine.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;210</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an analysis exception</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;211</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the dependency to analyze</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;212</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; @Override</pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the engine scanning</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;213</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an analysis exception</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;214</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;215</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; @Override</pre></td></tr>
<tr> <td class="numLine">&nbsp;216</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">public</span> <span class="keyword">void</span> analyzeFileType(Dependency dependency, Engine engine) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;214</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(dependency.getActualFilePath());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;215</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File tmpDir = getNextTempDirectory();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;216</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; extractFiles(f, tmpDir, engine);</pre></td></tr>
<tr> <td class="numLine">&nbsp;217</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;217</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(dependency.getActualFilePath());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;218</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File tmpDir = getNextTempDirectory();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;219</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; extractFiles(f, tmpDir, engine);</pre></td></tr>
<tr> <td class="numLine">&nbsp;220</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;218</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLine">&nbsp;221</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//make a copy</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;219</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> Set&lt;Dependency&gt; dependencySet = findMoreDependencies(engine, tmpDir);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;220</td> <td class="nbHitsUncovered"><a title="Line 220: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 220: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (!dependencySet.isEmpty()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;221</td> <td class="nbHitsUncovered"><a title="Line 221: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 221: Conditional coverage 0% (0/2)."> <span class="keyword">for</span> (Dependency d : dependencySet) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;222</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//fix the dependency's display name and path</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;223</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String displayPath = String.format(<span class="string">"%s%s"</span>,</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;224</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; dependency.getFilePath(),</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;222</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> Set&lt;Dependency&gt; dependencySet = findMoreDependencies(engine, tmpDir);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;223</td> <td class="nbHitsUncovered"><a title="Line 223: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 223: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (!dependencySet.isEmpty()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;224</td> <td class="nbHitsUncovered"><a title="Line 224: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 224: Conditional coverage 0% (0/2)."> <span class="keyword">for</span> (Dependency d : dependencySet) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;225</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; d.getActualFilePath().substring(tmpDir.getAbsolutePath().length()));</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;226</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String displayName = String.format(<span class="string">"%s: %s"</span>,</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="comment">//fix the dependency's display name and path</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;226</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String displayPath = String.format(<span class="string">"%s%s"</span>,</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;227</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; dependency.getFileName(),</pre></td></tr>
<td class="src"><pre class="src">&nbsp; dependency.getFilePath(),</pre></td></tr>
<tr> <td class="numLine">&nbsp;228</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; d.getFileName());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;229</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFilePath(displayPath);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;230</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFileName(displayName);</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; d.getActualFilePath().substring(tmpDir.getAbsolutePath().length()));</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;229</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String displayName = String.format(<span class="string">"%s: %s"</span>,</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;230</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; dependency.getFileName(),</pre></td></tr>
<tr> <td class="numLine">&nbsp;231</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; d.getFileName());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;232</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFilePath(displayPath);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;233</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFileName(displayName);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;234</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;232</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLine">&nbsp;235</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//TODO - can we get more evidence from the parent? EAR contains module name, etc.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;233</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLine">&nbsp;236</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//analyze the dependency (i.e. extract files) if it is a supported type.</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;234</td> <td class="nbHitsUncovered"><a title="Line 234: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 234: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (<span class="keyword">this</span>.accept(d.getActualFile()) &amp;&amp; scanDepth &lt; MAX_SCAN_DEPTH) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;235</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; scanDepth += 1;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;236</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; analyze(d, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;237</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; scanDepth -= 1;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;238</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;237</td> <td class="nbHitsUncovered"><a title="Line 237: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 237: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (<span class="keyword">this</span>.accept(d.getActualFile()) &amp;&amp; scanDepth &lt; MAX_SCAN_DEPTH) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;238</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; scanDepth += 1;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;239</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; analyze(d, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;240</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; scanDepth -= 1;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;241</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;239</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;240</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;242</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;243</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;241</td> <td class="nbHitsUncovered"><a title="Line 241: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 241: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (REMOVE_FROM_ANALYSIS.accept(dependency.getActualFile())) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;242</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; addDisguisedJarsToDependencies(dependency, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;243</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; engine.getDependencies().remove(dependency);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;244</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;245</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; Collections.sort(engine.getDependencies());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;246</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;244</td> <td class="nbHitsUncovered"><a title="Line 244: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 244: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (REMOVE_FROM_ANALYSIS.accept(dependency.getActualFile())) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;245</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; addDisguisedJarsToDependencies(dependency, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;246</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; engine.getDependencies().remove(dependency);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;247</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;248</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;249</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * If a zip file was identified as a possible JAR, this method will add the zip to the list of dependencies.</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;248</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; Collections.sort(engine.getDependencies());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;249</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;250</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;251</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the zip file</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;252</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the engine</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * If a zip file was identified as a possible JAR, this method will add the zip to the list of dependencies.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;253</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an issue</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;254</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the zip file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;255</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the engine</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;256</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an issue</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;257</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;258</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> addDisguisedJarsToDependencies(Dependency dependency, Engine engine) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;256</td> <td class="nbHitsUncovered"><a title="Line 256: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 256: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (ZIP_FILTER.accept(dependency.getActualFile()) &amp;&amp; isZipFileActuallyJarFile(dependency)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;257</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File tdir = getNextTempDirectory();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;258</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String fileName = dependency.getFileName();</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;259</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;259</td> <td class="nbHitsUncovered"><a title="Line 259: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 259: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (ZIP_FILTER.accept(dependency.getActualFile()) &amp;&amp; isZipFileActuallyJarFile(dependency)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;260</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File tdir = getNextTempDirectory();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;261</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String fileName = dependency.getFileName();</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;262</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;260</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.info(<span class="string">"The zip file '{}' appears to be a JAR file, making a copy and analyzing it as a JAR."</span>, fileName);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;261</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;263</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.info(<span class="string">"The zip file '{}' appears to be a JAR file, making a copy and analyzing it as a JAR."</span>, fileName);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;264</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;262</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File tmpLoc = <span class="keyword">new</span> File(tdir, fileName.substring(0, fileName.length() - 3) + <span class="string">"jar"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;263</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;265</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File tmpLoc = <span class="keyword">new</span> File(tdir, fileName.substring(0, fileName.length() - 3) + <span class="string">"jar"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;266</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;264</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; org.apache.commons.io.FileUtils.copyFile(tdir, tmpLoc);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;265</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> Set&lt;Dependency&gt; dependencySet = findMoreDependencies(engine, tmpLoc);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;266</td> <td class="nbHitsUncovered"><a title="Line 266: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 266: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!dependencySet.isEmpty()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;267</td> <td class="nbHitsUncovered"><a title="Line 267: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 267: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (dependencySet.size() != 1) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;268</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.info(<span class="string">"Deep copy of ZIP to JAR file resulted in more than one dependency?"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;269</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;267</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; org.apache.commons.io.FileUtils.copyFile(tdir, tmpLoc);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;268</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> Set&lt;Dependency&gt; dependencySet = findMoreDependencies(engine, tmpLoc);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;269</td> <td class="nbHitsUncovered"><a title="Line 269: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 269: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!dependencySet.isEmpty()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;270</td> <td class="nbHitsUncovered"><a title="Line 270: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 270: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (dependencySet.size() != 1) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;271</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.info(<span class="string">"Deep copy of ZIP to JAR file resulted in more than one dependency?"</span>);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;272</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;270</td> <td class="nbHitsUncovered"><a title="Line 270: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 270: Conditional coverage 0% (0/2)."> <span class="keyword">for</span> (Dependency d : dependencySet) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;271</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;273</td> <td class="nbHitsUncovered"><a title="Line 273: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 273: Conditional coverage 0% (0/2)."> <span class="keyword">for</span> (Dependency d : dependencySet) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;274</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//fix the dependency's display name and path</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;272</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFilePath(dependency.getFilePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;273</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setDisplayFileName(dependency.getFileName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;274</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;275</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;275</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setFilePath(dependency.getFilePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;276</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; d.setDisplayFileName(dependency.getFileName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;277</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;278</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;276</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;277</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Unable to perform deep copy on '{}'"</span>, dependency.getActualFile().getPath(), ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;278</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;279</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;280</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;281</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;279</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;280</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Unable to perform deep copy on '{}'"</span>, dependency.getActualFile().getPath(), ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;281</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;282</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * An empty dependency set.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;283</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;284</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">final</span> Set&lt;Dependency&gt; EMPTY_DEPENDENCY_SET = Collections.emptySet();</pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;283</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;284</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;285</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * An empty dependency set.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;286</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;287</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Scan the given file/folder, and return any new dependencies found.</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;287</td> <td class="nbHitsCovered">&nbsp;1</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">final</span> Set&lt;Dependency&gt; EMPTY_DEPENDENCY_SET = Collections.emptySet();</pre></td></tr>
<tr> <td class="numLine">&nbsp;288</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;289</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine used to scan</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;290</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param file target of scanning</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Scan the given file/folder, and return any new dependencies found.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;291</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return any dependencies that weren't known to the engine before</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;292</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine used to scan</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;293</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param file target of scanning</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;294</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return any dependencies that weren't known to the engine before</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;295</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;296</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> Set&lt;Dependency&gt; findMoreDependencies(Engine engine, File file) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;294</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> List&lt;Dependency&gt; before = <span class="keyword">new</span> ArrayList&lt;Dependency&gt;(engine.getDependencies());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;295</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; engine.scan(file);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;296</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> List&lt;Dependency&gt; after = engine.getDependencies();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;297</td> <td class="nbHitsUncovered"><a title="Line 297: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 297: Conditional coverage 50% (1/2)."> <span class="keyword">final</span> <span class="keyword">boolean</span> sizeChanged = before.size() != after.size();</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;298</td> <td class="nbHits">&nbsp;</td>
<tr> <td class="numLineCover">&nbsp;297</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> List&lt;Dependency&gt; before = <span class="keyword">new</span> ArrayList&lt;Dependency&gt;(engine.getDependencies());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;298</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; engine.scan(file);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;299</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> List&lt;Dependency&gt; after = engine.getDependencies();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;300</td> <td class="nbHitsUncovered"><a title="Line 300: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 300: Conditional coverage 50% (1/2)."> <span class="keyword">final</span> <span class="keyword">boolean</span> sizeChanged = before.size() != after.size();</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;301</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> Set&lt;Dependency&gt; newDependencies;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;299</td> <td class="nbHitsUncovered"><a title="Line 299: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 299: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (sizeChanged) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;300</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//get the new dependencies</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;301</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; newDependencies = <span class="keyword">new</span> HashSet&lt;Dependency&gt;(after);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;302</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; newDependencies.removeAll(before);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;302</td> <td class="nbHitsUncovered"><a title="Line 302: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 302: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (sizeChanged) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;303</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//get the new dependencies</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;304</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; newDependencies = <span class="keyword">new</span> HashSet&lt;Dependency&gt;(after);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;305</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; newDependencies.removeAll(before);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;306</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">else</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;304</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; newDependencies = EMPTY_DEPENDENCY_SET;</pre></td></tr>
<tr> <td class="numLine">&nbsp;305</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;306</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">return</span> newDependencies;</pre></td></tr>
<tr> <td class="numLine">&nbsp;307</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;307</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; newDependencies = EMPTY_DEPENDENCY_SET;</pre></td></tr>
<tr> <td class="numLine">&nbsp;308</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;309</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;309</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">return</span> newDependencies;</pre></td></tr>
<tr> <td class="numLine">&nbsp;310</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Retrieves the next temporary directory to extract an archive too.</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;311</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;312</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return a directory</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;313</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if unable to create temporary directory</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Retrieves the next temporary directory to extract an archive too.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;314</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;315</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> File getNextTempDirectory() <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;316</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; dirCount += 1;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;317</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File directory = <span class="keyword">new</span> File(tempFileLocation, String.valueOf(dirCount));</pre></td></tr>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return a directory</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;316</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if unable to create temporary directory</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;317</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;318</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//getting an exception for some directories not being able to be created; might be because the directory already exists?</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;319</td> <td class="nbHitsUncovered"><a title="Line 319: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 319: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (directory.exists()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;320</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">return</span> getNextTempDirectory();</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> File getNextTempDirectory() <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;319</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; dirCount += 1;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;320</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File directory = <span class="keyword">new</span> File(tempFileLocation, String.valueOf(dirCount));</pre></td></tr>
<tr> <td class="numLine">&nbsp;321</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">//getting an exception for some directories not being able to be created; might be because the directory already exists?</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;322</td> <td class="nbHitsUncovered"><a title="Line 322: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 322: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (directory.exists()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;323</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">return</span> getNextTempDirectory();</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;324</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;322</td> <td class="nbHitsUncovered"><a title="Line 322: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 322: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (!directory.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;323</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to create temp directory '%s'."</span>, directory.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;324</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;325</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;326</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">return</span> directory;</pre></td></tr>
<tr> <td class="numLine">&nbsp;327</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;325</td> <td class="nbHitsUncovered"><a title="Line 325: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 325: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (!directory.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;326</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to create temp directory '%s'."</span>, directory.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;327</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;328</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;329</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;329</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">return</span> directory;</pre></td></tr>
<tr> <td class="numLine">&nbsp;330</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts the contents of an archive into the specified directory.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;331</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;332</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param archive an archive file such as a WAR or EAR</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;333</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param destination a directory to extract the contents to</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;334</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the scanning engine</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;335</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if the archive is not found</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;336</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;337</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> extractFiles(File archive, File destination, Engine engine) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;338</td> <td class="nbHitsUncovered"><a title="Line 338: Conditional coverage 50% (2/4) [each condition: 50%, 50%].">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 338: Conditional coverage 50% (2/4) [each condition: 50%, 50%]."> <span class="keyword">if</span> (archive != <span class="keyword">null</span> &amp;&amp; destination != <span class="keyword">null</span>) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;339</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; FileInputStream fis;</pre></td></tr>
<tr> <td class="numLine">&nbsp;340</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;341</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; fis = <span class="keyword">new</span> FileInputStream(archive);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;342</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;343</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;344</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(<span class="string">"Archive file was not found."</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;345</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;346</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> String archiveExt = FileUtils.getFileExtension(archive.getName()).toLowerCase();</pre></td></tr>
<tr> <td class="numLine">&nbsp;347</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;348</td> <td class="nbHitsUncovered"><a title="Line 348: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 348: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (ZIPPABLES.contains(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;349</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; extractArchive(<span class="keyword">new</span> ZipArchiveInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), destination, engine);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;350</td> <td class="nbHitsUncovered"><a title="Line 350: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 350: Conditional coverage 0% (0/2)."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"tar"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;351</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; extractArchive(<span class="keyword">new</span> TarArchiveInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), destination, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;352</td> <td class="nbHitsUncovered"><a title="Line 352: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 352: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"gz"</span>.equals(archiveExt) || <span class="string">"tgz"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;353</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String uncompressedName = GzipUtils.getUncompressedFilename(archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;354</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(destination, uncompressedName);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;355</td> <td class="nbHitsUncovered"><a title="Line 355: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 355: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (engine.accept(f)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;356</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; decompressFile(<span class="keyword">new</span> GzipCompressorInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), f);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;357</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;358</td> <td class="nbHitsUncovered"><a title="Line 358: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 358: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"bz2"</span>.equals(archiveExt) || <span class="string">"tbz2"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;359</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String uncompressedName = BZip2Utils.getUncompressedFilename(archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;360</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(destination, uncompressedName);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;361</td> <td class="nbHitsUncovered"><a title="Line 361: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 361: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (engine.accept(f)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;362</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; decompressFile(<span class="keyword">new</span> BZip2CompressorInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), f);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;363</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;364</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;365</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (ArchiveExtractionException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;366</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Exception extracting archive '{}'."</span>, archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;367</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;368</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;369</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Exception reading archive '{}'."</span>, archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;370</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;371</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;372</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; close(fis);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;373</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;374</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;375</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;376</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;377</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;378</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts files from an archive.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;379</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;380</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param input the archive to extract files from</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;381</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param destination the location to write the files too</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;382</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the dependency-check engine</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;383</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws ArchiveExtractionException thrown if there is an exception extracting files from the archive</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;384</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;385</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> extractArchive(ArchiveInputStream input, File destination, Engine engine) <span class="keyword">throws</span> ArchiveExtractionException {</pre></td></tr>
<tr> <td class="numLine">&nbsp;386</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; ArchiveEntry entry;</pre></td></tr>
<tr> <td class="numLine">&nbsp;387</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;388</td> <td class="nbHitsCovered"><a title="Line 388: Conditional coverage 100% (2/2).">&nbsp;887</a></td> <td class="src"><pre class="src">&nbsp;<a title="Line 388: Conditional coverage 100% (2/2)."> <span class="keyword">while</span> ((entry = input.getNextEntry()) != <span class="keyword">null</span>) {</a></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;389</td> <td class="nbHitsCovered">&nbsp;885</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File file = <span class="keyword">new</span> File(destination, entry.getName());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;390</td> <td class="nbHitsCovered"><a title="Line 390: Conditional coverage 100% (2/2).">&nbsp;885</a></td> <td class="src"><pre class="src">&nbsp;<a title="Line 390: Conditional coverage 100% (2/2)."> <span class="keyword">if</span> (entry.isDirectory()) {</a></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;391</td> <td class="nbHitsUncovered"><a title="Line 391: Conditional coverage 50% (2/4) [each condition: 50%, 50%].">&nbsp;36</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 391: Conditional coverage 50% (2/4) [each condition: 50%, 50%]."> <span class="keyword">if</span> (!file.exists() &amp;&amp; !file.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;392</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to create directory '%s'."</span>, file.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;393</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;394</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;395</td> <td class="nbHitsUncovered"><a title="Line 395: Conditional coverage 50% (1/2).">&nbsp;849</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 395: Conditional coverage 50% (1/2)."> } <span class="keyword">else</span> <span class="keyword">if</span> (engine.accept(file)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;396</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; extractAcceptedFile(input, file);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;397</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;398</td> <td class="nbHitsCovered">&nbsp;885</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;399</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (Throwable ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;400</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;401</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;402</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; close(input);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;403</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;404</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;405</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;406</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;407</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts a file from an archive.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;408</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;409</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param input the archives input stream</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;410</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param file the file to extract</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;411</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an error</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;412</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;413</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">void</span> extractAcceptedFile(ArchiveInputStream input, File file) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;414</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Extracting '{}'"</span>, file.getPath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;415</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; FileOutputStream fos = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;416</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;417</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File parent = file.getParentFile();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;418</td> <td class="nbHitsUncovered"><a title="Line 418: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 418: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!parent.isDirectory()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;419</td> <td class="nbHitsUncovered"><a title="Line 419: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 419: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!parent.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;420</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to build directory '%s'."</span>, parent.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;421</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;422</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;423</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;424</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; fos = <span class="keyword">new</span> FileOutputStream(file);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;425</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; IOUtils.copy(input, fos);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;426</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;427</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;428</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to find file '%s'."</span>, file.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;429</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;430</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;431</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;432</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"IO Exception while parsing file '%s'."</span>, file.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;433</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg, ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;434</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;435</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; close(fos);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;436</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;437</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;438</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;439</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;440</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Decompresses a file.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;441</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;442</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param inputStream the compressed file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;443</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param outputFile the location to write the decompressed file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;444</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws ArchiveExtractionException thrown if there is an exception decompressing the file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;445</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;446</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> decompressFile(CompressorInputStream inputStream, File outputFile) <span class="keyword">throws</span> ArchiveExtractionException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;447</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Decompressing '{}'"</span>, outputFile.getPath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;448</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; FileOutputStream out = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;449</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;450</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; out = <span class="keyword">new</span> FileOutputStream(outputFile);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;451</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; IOUtils.copy(inputStream, out);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;452</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;453</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;454</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;455</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;456</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;457</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;458</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;459</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; close(out);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;460</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;461</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;462</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;463</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;464</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Close the given {@link Closeable} instance, ignoring nulls, and logging any thrown {@link IOException}.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;465</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;466</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param closeable to be closed</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;467</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;468</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">void</span> close(Closeable closeable) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;469</td> <td class="nbHitsUncovered"><a title="Line 469: Conditional coverage 50% (1/2).">&nbsp;4</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 469: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (<span class="keyword">null</span> != closeable) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;470</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;471</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; closeable.close();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;472</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;473</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.trace(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;474</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;475</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;476</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;477</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;478</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;479</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Attempts to determine if a zip file is actually a JAR file.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;480</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;481</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the dependency to check</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;482</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return true if the dependency appears to be a JAR file; otherwise false</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;483</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;484</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">boolean</span> isZipFileActuallyJarFile(Dependency dependency) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;485</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">boolean</span> isJar = <span class="keyword">false</span>;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;486</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; ZipFile zip = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;487</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;488</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; zip = <span class="keyword">new</span> ZipFile(dependency.getActualFilePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;489</td> <td class="nbHitsUncovered"><a title="Line 489: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 489: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (zip.getEntry(<span class="string">"META-INF/MANIFEST.MF"</span>) != <span class="keyword">null</span></a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;490</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; || zip.getEntry(<span class="string">"META-INF/maven"</span>) != <span class="keyword">null</span>) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;491</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> Enumeration&lt;ZipArchiveEntry&gt; entries = zip.getEntries();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;492</td> <td class="nbHitsUncovered"><a title="Line 492: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 492: Conditional coverage 0% (0/2)."> <span class="keyword">while</span> (entries.hasMoreElements()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;493</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> ZipArchiveEntry entry = entries.nextElement();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;494</td> <td class="nbHitsUncovered"><a title="Line 494: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 494: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!entry.isDirectory()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;495</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String name = entry.getName().toLowerCase();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;496</td> <td class="nbHitsUncovered"><a title="Line 496: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 496: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (name.endsWith(<span class="string">".class"</span>)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;497</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; isJar = <span class="keyword">true</span>;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;498</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">break</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;499</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;500</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;501</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;502</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;503</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;504</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Unable to unzip zip file '{}'"</span>, dependency.getFilePath(), ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;505</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;506</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; ZipFile.closeQuietly(zip);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;507</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;508</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;509</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">return</span> isJar;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;510</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;331</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;332</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;333</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts the contents of an archive into the specified directory.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;334</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;335</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param archive an archive file such as a WAR or EAR</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;336</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param destination a directory to extract the contents to</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;337</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the scanning engine</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;338</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if the archive is not found</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;339</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;340</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> extractFiles(File archive, File destination, Engine engine) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;341</td> <td class="nbHitsUncovered"><a title="Line 341: Conditional coverage 50% (2/4) [each condition: 50%, 50%].">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 341: Conditional coverage 50% (2/4) [each condition: 50%, 50%]."> <span class="keyword">if</span> (archive != <span class="keyword">null</span> &amp;&amp; destination != <span class="keyword">null</span>) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;342</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; FileInputStream fis;</pre></td></tr>
<tr> <td class="numLine">&nbsp;343</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;344</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; fis = <span class="keyword">new</span> FileInputStream(archive);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;345</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;346</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;347</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(<span class="string">"Archive file was not found."</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;348</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;349</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> String archiveExt = FileUtils.getFileExtension(archive.getName()).toLowerCase();</pre></td></tr>
<tr> <td class="numLine">&nbsp;350</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;351</td> <td class="nbHitsUncovered"><a title="Line 351: Conditional coverage 50% (1/2).">&nbsp;2</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 351: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (ZIPPABLES.contains(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;352</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; extractArchive(<span class="keyword">new</span> ZipArchiveInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), destination, engine);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;353</td> <td class="nbHitsUncovered"><a title="Line 353: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 353: Conditional coverage 0% (0/2)."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"tar"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;354</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; extractArchive(<span class="keyword">new</span> TarArchiveInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), destination, engine);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;355</td> <td class="nbHitsUncovered"><a title="Line 355: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 355: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"gz"</span>.equals(archiveExt) || <span class="string">"tgz"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;356</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String uncompressedName = GzipUtils.getUncompressedFilename(archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;357</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(destination, uncompressedName);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;358</td> <td class="nbHitsUncovered"><a title="Line 358: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 358: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (engine.accept(f)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;359</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; decompressFile(<span class="keyword">new</span> GzipCompressorInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), f);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;360</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;361</td> <td class="nbHitsUncovered"><a title="Line 361: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 361: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> } <span class="keyword">else</span> <span class="keyword">if</span> (<span class="string">"bz2"</span>.equals(archiveExt) || <span class="string">"tbz2"</span>.equals(archiveExt)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;362</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String uncompressedName = BZip2Utils.getUncompressedFilename(archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;363</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File f = <span class="keyword">new</span> File(destination, uncompressedName);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;364</td> <td class="nbHitsUncovered"><a title="Line 364: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 364: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (engine.accept(f)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;365</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; decompressFile(<span class="keyword">new</span> BZip2CompressorInputStream(<span class="keyword">new</span> BufferedInputStream(fis)), f);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;366</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;367</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;368</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (ArchiveExtractionException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;369</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Exception extracting archive '{}'."</span>, archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;370</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;371</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;372</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.warn(<span class="string">"Exception reading archive '{}'."</span>, archive.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;373</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;374</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;375</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; close(fis);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;376</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;377</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;378</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;379</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;380</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;381</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts files from an archive.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;382</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;383</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param input the archive to extract files from</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;384</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param destination the location to write the files too</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;385</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param engine the dependency-check engine</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;386</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws ArchiveExtractionException thrown if there is an exception extracting files from the archive</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;387</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;388</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> extractArchive(ArchiveInputStream input, File destination, Engine engine) <span class="keyword">throws</span> ArchiveExtractionException {</pre></td></tr>
<tr> <td class="numLine">&nbsp;389</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; ArchiveEntry entry;</pre></td></tr>
<tr> <td class="numLine">&nbsp;390</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;391</td> <td class="nbHitsCovered"><a title="Line 391: Conditional coverage 100% (2/2).">&nbsp;887</a></td> <td class="src"><pre class="src">&nbsp;<a title="Line 391: Conditional coverage 100% (2/2)."> <span class="keyword">while</span> ((entry = input.getNextEntry()) != <span class="keyword">null</span>) {</a></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;392</td> <td class="nbHitsCovered">&nbsp;885</td> <td class="src"><pre class="src">&nbsp; <span class="keyword">final</span> File file = <span class="keyword">new</span> File(destination, entry.getName());</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;393</td> <td class="nbHitsCovered"><a title="Line 393: Conditional coverage 100% (2/2).">&nbsp;885</a></td> <td class="src"><pre class="src">&nbsp;<a title="Line 393: Conditional coverage 100% (2/2)."> <span class="keyword">if</span> (entry.isDirectory()) {</a></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;394</td> <td class="nbHitsUncovered"><a title="Line 394: Conditional coverage 50% (2/4) [each condition: 50%, 50%].">&nbsp;36</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 394: Conditional coverage 50% (2/4) [each condition: 50%, 50%]."> <span class="keyword">if</span> (!file.exists() &amp;&amp; !file.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;395</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to create directory '%s'."</span>, file.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;396</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;397</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;398</td> <td class="nbHitsUncovered"><a title="Line 398: Conditional coverage 50% (1/2).">&nbsp;849</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 398: Conditional coverage 50% (1/2)."> } <span class="keyword">else</span> <span class="keyword">if</span> (engine.accept(file)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;399</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; extractAcceptedFile(input, file);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;400</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;401</td> <td class="nbHitsCovered">&nbsp;885</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;402</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (Throwable ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;403</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;404</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;405</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; close(input);</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;406</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;407</td> <td class="nbHitsCovered">&nbsp;2</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;408</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;409</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;410</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Extracts a file from an archive.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;411</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;412</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param input the archives input stream</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;413</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param file the file to extract</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;414</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws AnalysisException thrown if there is an error</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;415</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;416</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">void</span> extractAcceptedFile(ArchiveInputStream input, File file) <span class="keyword">throws</span> AnalysisException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;417</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Extracting '{}'"</span>, file.getPath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;418</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; FileOutputStream fos = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;419</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;420</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> File parent = file.getParentFile();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;421</td> <td class="nbHitsUncovered"><a title="Line 421: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 421: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (!parent.isDirectory() &amp;&amp; !parent.mkdirs()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;422</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to build directory '%s'."</span>, parent.getAbsolutePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;423</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;424</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;425</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; fos = <span class="keyword">new</span> FileOutputStream(file);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;426</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; IOUtils.copy(input, fos);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;427</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;428</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;429</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"Unable to find file '%s'."</span>, file.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;430</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;431</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;432</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;433</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String msg = String.format(<span class="string">"IO Exception while parsing file '%s'."</span>, file.getName());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;434</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> AnalysisException(msg, ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;435</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;436</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; close(fos);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;437</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;438</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;439</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;440</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;441</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Decompresses a file.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;442</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;443</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param inputStream the compressed file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;444</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param outputFile the location to write the decompressed file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;445</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @throws ArchiveExtractionException thrown if there is an exception decompressing the file</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;446</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;447</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">void</span> decompressFile(CompressorInputStream inputStream, File outputFile) <span class="keyword">throws</span> ArchiveExtractionException {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;448</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Decompressing '{}'"</span>, outputFile.getPath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;449</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; FileOutputStream out = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;450</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;451</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; out = <span class="keyword">new</span> FileOutputStream(outputFile);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;452</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; IOUtils.copy(inputStream, out);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;453</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (FileNotFoundException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;454</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;455</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;456</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;457</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;458</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">throw</span> <span class="keyword">new</span> ArchiveExtractionException(ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;459</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;460</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; close(out);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;461</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;462</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;463</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;464</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;465</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Close the given {@link Closeable} instance, ignoring nulls, and logging any thrown {@link IOException}.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;466</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;467</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param closeable to be closed</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;468</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;469</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">static</span> <span class="keyword">void</span> close(Closeable closeable) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;470</td> <td class="nbHitsUncovered"><a title="Line 470: Conditional coverage 50% (1/2).">&nbsp;4</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 470: Conditional coverage 50% (1/2)."> <span class="keyword">if</span> (<span class="keyword">null</span> != closeable) {</a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;471</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;472</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; closeable.close();</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;473</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;474</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.trace(<span class="string">""</span>, ex);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;475</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;476</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;477</td> <td class="nbHitsCovered">&nbsp;4</td> <td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;478</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLine">&nbsp;479</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="comment">/**</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;480</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * Attempts to determine if a zip file is actually a JAR file.</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;481</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> *</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;482</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @param dependency the dependency to check</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;483</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> * @return true if the dependency appears to be a JAR file; otherwise false</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;484</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;<span class="comment"> */</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;485</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">private</span> <span class="keyword">boolean</span> isZipFileActuallyJarFile(Dependency dependency) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;486</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">boolean</span> isJar = <span class="keyword">false</span>;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;487</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; ZipFile zip = <span class="keyword">null</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;488</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; <span class="keyword">try</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;489</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; zip = <span class="keyword">new</span> ZipFile(dependency.getActualFilePath());</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;490</td> <td class="nbHitsUncovered"><a title="Line 490: Conditional coverage 0% (0/4) [each condition: 0%, 0%].">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 490: Conditional coverage 0% (0/4) [each condition: 0%, 0%]."> <span class="keyword">if</span> (zip.getEntry(<span class="string">"META-INF/MANIFEST.MF"</span>) != <span class="keyword">null</span></a></span></pre></td></tr>
<tr> <td class="numLine">&nbsp;491</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; || zip.getEntry(<span class="string">"META-INF/maven"</span>) != <span class="keyword">null</span>) {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;492</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> Enumeration&lt;ZipArchiveEntry&gt; entries = zip.getEntries();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;493</td> <td class="nbHitsUncovered"><a title="Line 493: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 493: Conditional coverage 0% (0/2)."> <span class="keyword">while</span> (entries.hasMoreElements()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;494</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> ZipArchiveEntry entry = entries.nextElement();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;495</td> <td class="nbHitsUncovered"><a title="Line 495: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 495: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (!entry.isDirectory()) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;496</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">final</span> String name = entry.getName().toLowerCase();</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;497</td> <td class="nbHitsUncovered"><a title="Line 497: Conditional coverage 0% (0/2).">&nbsp;0</a></td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp;<a title="Line 497: Conditional coverage 0% (0/2)."> <span class="keyword">if</span> (name.endsWith(<span class="string">".class"</span>)) {</a></span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;498</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; isJar = <span class="keyword">true</span>;</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;499</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">break</span>;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;500</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;501</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;502</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;503</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;504</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; } <span class="keyword">catch</span> (IOException ex) {</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;505</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; LOGGER.debug(<span class="string">"Unable to unzip zip file '{}'"</span>, dependency.getFilePath(), ex);</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;506</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; } <span class="keyword">finally</span> {</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;507</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; ZipFile.closeQuietly(zip);</span></pre></td></tr>
<tr> <td class="numLineCover">&nbsp;508</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; }</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;509</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;</pre></td></tr>
<tr> <td class="numLineCover">&nbsp;510</td> <td class="nbHitsUncovered">&nbsp;0</td> <td class="src"><pre class="src"><span class="srcUncovered">&nbsp; <span class="keyword">return</span> isJar;</span></pre></td></tr>
<tr> <td class="numLine">&nbsp;511</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp; }</pre></td></tr>
<tr> <td class="numLine">&nbsp;512</td> <td class="nbHits">&nbsp;</td>
<td class="src"><pre class="src">&nbsp;}</pre></td></tr>
</table>
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